Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdhD and LU632_RS00100 are separated by 8 nucleotides LU632_RS00100 and LU632_RS00105 are separated by 171 nucleotides
LU632_RS00095: fdhD - formate dehydrogenase accessory sulfurtransferase FdhD, at 18,587 to 19,397
fdhD
LU632_RS00100: LU632_RS00100 - DeoR/GlpR family DNA-binding transcription regulator, at 19,406 to 20,181
_RS00100
LU632_RS00105: LU632_RS00105 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,353 to 21,589
_RS00105
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.435 kb on - strand at 18.435 kb on - strand at 18.561 kb on - strand at 18.701 kb on + strand, within fdhD at 18.805 kb on + strand, within fdhD at 18.805 kb on + strand, within fdhD at 18.805 kb on + strand, within fdhD at 18.810 kb on - strand, within fdhD at 18.821 kb on - strand, within fdhD at 18.821 kb on - strand, within fdhD at 19.032 kb on + strand, within fdhD at 19.037 kb on + strand, within fdhD at 19.225 kb on - strand, within fdhD at 19.225 kb on - strand, within fdhD at 19.320 kb on - strand at 19.368 kb on - strand at 19.395 kb on + strand at 19.396 kb on - strand at 19.513 kb on - strand, within LU632_RS00100 at 19.540 kb on + strand, within LU632_RS00100 at 19.636 kb on - strand, within LU632_RS00100 at 19.697 kb on - strand, within LU632_RS00100 at 19.869 kb on + strand, within LU632_RS00100 at 19.870 kb on - strand, within LU632_RS00100 at 19.870 kb on - strand, within LU632_RS00100 at 19.960 kb on + strand, within LU632_RS00100 at 20.181 kb on + strand at 20.181 kb on + strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.238 kb on + strand at 20.238 kb on + strand at 20.239 kb on - strand at 20.245 kb on - strand at 20.250 kb on - strand at 20.255 kb on - strand at 20.266 kb on + strand at 20.267 kb on - strand at 20.267 kb on - strand at 20.543 kb on + strand, within LU632_RS00105 at 20.544 kb on - strand, within LU632_RS00105 at 20.544 kb on - strand, within LU632_RS00105 at 20.547 kb on + strand, within LU632_RS00105 at 20.548 kb on - strand, within LU632_RS00105 at 20.548 kb on - strand, within LU632_RS00105 at 20.548 kb on - strand, within LU632_RS00105 at 20.569 kb on + strand, within LU632_RS00105 at 20.570 kb on - strand, within LU632_RS00105 at 20.612 kb on - strand, within LU632_RS00105 at 20.612 kb on - strand, within LU632_RS00105 at 20.612 kb on - strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.715 kb on + strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.716 kb on - strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.717 kb on + strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.718 kb on - strand, within LU632_RS00105 at 20.823 kb on - strand, within LU632_RS00105 at 20.890 kb on + strand, within LU632_RS00105 at 20.890 kb on + strand, within LU632_RS00105 at 20.890 kb on + strand, within LU632_RS00105 at 20.891 kb on - strand, within LU632_RS00105 at 20.891 kb on - strand, within LU632_RS00105 at 20.891 kb on - strand, within LU632_RS00105 at 20.936 kb on - strand, within LU632_RS00105 at 21.100 kb on + strand, within LU632_RS00105 at 21.100 kb on + strand, within LU632_RS00105 at 21.101 kb on - strand, within LU632_RS00105 at 21.133 kb on + strand, within LU632_RS00105 at 21.134 kb on - strand, within LU632_RS00105 at 21.134 kb on - strand, within LU632_RS00105 at 21.134 kb on - strand, within LU632_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1) remove 18,435 - +0.5 18,435 - -2.4 18,561 - -1.2 18,701 + fdhD LU632_RS00095 0.14 -1.1 18,805 + fdhD LU632_RS00095 0.27 +0.3 18,805 + fdhD LU632_RS00095 0.27 +1.1 18,805 + fdhD LU632_RS00095 0.27 +0.2 18,810 - fdhD LU632_RS00095 0.27 -0.7 18,821 - fdhD LU632_RS00095 0.29 +0.2 18,821 - fdhD LU632_RS00095 0.29 +1.0 19,032 + fdhD LU632_RS00095 0.55 -0.0 19,037 + fdhD LU632_RS00095 0.55 -0.8 19,225 - fdhD LU632_RS00095 0.79 -3.1 19,225 - fdhD LU632_RS00095 0.79 +1.5 19,320 - -0.0 19,368 - -0.1 19,395 + -1.4 19,396 - +0.1 19,513 - LU632_RS00100 0.14 +2.0 19,540 + LU632_RS00100 0.17 +2.2 19,636 - LU632_RS00100 0.30 +2.5 19,697 - LU632_RS00100 0.38 +0.0 19,869 + LU632_RS00100 0.60 +2.3 19,870 - LU632_RS00100 0.60 +0.2 19,870 - LU632_RS00100 0.60 +1.0 19,960 + LU632_RS00100 0.71 +1.4 20,181 + -1.3 20,181 + -1.3 20,182 - -0.4 20,182 - -0.4 20,238 + +0.7 20,238 + -3.4 20,239 - -2.4 20,245 - +0.6 20,250 - -0.4 20,255 - -1.5 20,266 + +1.2 20,267 - +0.1 20,267 - +0.4 20,543 + LU632_RS00105 0.15 +1.1 20,544 - LU632_RS00105 0.15 -1.3 20,544 - LU632_RS00105 0.15 -2.6 20,547 + LU632_RS00105 0.16 +1.2 20,548 - LU632_RS00105 0.16 +0.6 20,548 - LU632_RS00105 0.16 -2.0 20,548 - LU632_RS00105 0.16 -1.1 20,569 + LU632_RS00105 0.17 -1.1 20,570 - LU632_RS00105 0.18 -1.2 20,612 - LU632_RS00105 0.21 +0.7 20,612 - LU632_RS00105 0.21 +1.2 20,612 - LU632_RS00105 0.21 -0.8 20,715 + LU632_RS00105 0.29 -0.6 20,715 + LU632_RS00105 0.29 +0.0 20,715 + LU632_RS00105 0.29 -1.1 20,715 + LU632_RS00105 0.29 -1.4 20,715 + LU632_RS00105 0.29 -3.1 20,715 + LU632_RS00105 0.29 -1.1 20,715 + LU632_RS00105 0.29 +1.7 20,715 + LU632_RS00105 0.29 -2.1 20,716 - LU632_RS00105 0.29 +0.9 20,716 - LU632_RS00105 0.29 +0.8 20,716 - LU632_RS00105 0.29 +0.1 20,716 - LU632_RS00105 0.29 -0.4 20,716 - LU632_RS00105 0.29 -0.3 20,716 - LU632_RS00105 0.29 -0.3 20,716 - LU632_RS00105 0.29 +1.4 20,717 + LU632_RS00105 0.29 +1.0 20,717 + LU632_RS00105 0.29 +0.0 20,717 + LU632_RS00105 0.29 +0.3 20,717 + LU632_RS00105 0.29 -1.6 20,718 - LU632_RS00105 0.30 +1.0 20,718 - LU632_RS00105 0.30 +1.2 20,718 - LU632_RS00105 0.30 +1.4 20,718 - LU632_RS00105 0.30 +2.2 20,718 - LU632_RS00105 0.30 -0.8 20,823 - LU632_RS00105 0.38 +0.8 20,890 + LU632_RS00105 0.43 +0.1 20,890 + LU632_RS00105 0.43 -1.1 20,890 + LU632_RS00105 0.43 +0.5 20,891 - LU632_RS00105 0.43 +0.2 20,891 - LU632_RS00105 0.43 -0.0 20,891 - LU632_RS00105 0.43 -0.8 20,936 - LU632_RS00105 0.47 +2.2 21,100 + LU632_RS00105 0.60 +1.0 21,100 + LU632_RS00105 0.60 -1.4 21,101 - LU632_RS00105 0.60 +2.0 21,133 + LU632_RS00105 0.63 +0.2 21,134 - LU632_RS00105 0.63 -2.3 21,134 - LU632_RS00105 0.63 +1.6 21,134 - LU632_RS00105 0.63 +1.1
Or see this region's nucleotide sequence