Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00070

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkduD and LU632_RS00065 are separated by 90 nucleotidesLU632_RS00065 and LU632_RS00070 are separated by 73 nucleotidesLU632_RS00070 and LU632_RS00075 are separated by 143 nucleotides LU632_RS00060: kduD - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 12,621 to 13,382 kduD LU632_RS00065: LU632_RS00065 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 13,473 to 14,210 _RS00065 LU632_RS00070: LU632_RS00070 - hypothetical protein, at 14,284 to 14,787 _RS00070 LU632_RS00075: LU632_RS00075 - LacI family DNA-binding transcriptional regulator, at 14,931 to 15,956 _RS00075 Position (kb) 14 15Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 13.332 kb on + strandat 13.332 kb on + strandat 13.334 kb on + strandat 13.335 kb on - strandat 13.344 kb on + strandat 13.346 kb on + strandat 13.346 kb on + strandat 13.346 kb on + strandat 13.347 kb on - strandat 13.347 kb on - strandat 13.347 kb on - strandat 13.347 kb on - strandat 13.428 kb on + strandat 13.562 kb on + strand, within LU632_RS00065at 13.707 kb on + strand, within LU632_RS00065at 13.708 kb on - strand, within LU632_RS00065at 13.708 kb on - strand, within LU632_RS00065at 13.708 kb on - strand, within LU632_RS00065at 13.957 kb on + strand, within LU632_RS00065at 14.285 kb on + strandat 14.286 kb on - strandat 14.341 kb on - strand, within LU632_RS00070at 14.447 kb on + strand, within LU632_RS00070at 14.674 kb on + strand, within LU632_RS00070at 14.817 kb on - strandat 14.817 kb on - strandat 14.842 kb on - strandat 14.885 kb on + strandat 15.042 kb on - strand, within LU632_RS00075at 15.458 kb on + strand, within LU632_RS00075at 15.588 kb on + strand, within LU632_RS00075at 15.595 kb on + strand, within LU632_RS00075at 15.596 kb on - strand, within LU632_RS00075at 15.599 kb on + strand, within LU632_RS00075at 15.600 kb on - strand, within LU632_RS00075at 15.600 kb on - strand, within LU632_RS00075at 15.620 kb on - strand, within LU632_RS00075at 15.728 kb on + strand, within LU632_RS00075at 15.741 kb on - strand, within LU632_RS00075

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
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13,332 + -1.3
13,332 + -4.1
13,334 + -1.6
13,335 - +0.5
13,344 + +4.4
13,346 + -3.9
13,346 + +1.3
13,346 + +0.2
13,347 - -1.1
13,347 - -0.8
13,347 - -2.5
13,347 - +0.3
13,428 + -0.2
13,562 + LU632_RS00065 0.12 +0.4
13,707 + LU632_RS00065 0.32 -1.4
13,708 - LU632_RS00065 0.32 -0.7
13,708 - LU632_RS00065 0.32 +1.5
13,708 - LU632_RS00065 0.32 +0.2
13,957 + LU632_RS00065 0.66 +1.5
14,285 + -1.4
14,286 - -1.1
14,341 - LU632_RS00070 0.11 -1.8
14,447 + LU632_RS00070 0.32 -0.8
14,674 + LU632_RS00070 0.77 -1.2
14,817 - -1.0
14,817 - +2.0
14,842 - +0.1
14,885 + -1.1
15,042 - LU632_RS00075 0.11 +1.3
15,458 + LU632_RS00075 0.51 +1.5
15,588 + LU632_RS00075 0.64 -1.4
15,595 + LU632_RS00075 0.65 -1.6
15,596 - LU632_RS00075 0.65 -0.5
15,599 + LU632_RS00075 0.65 -0.1
15,600 - LU632_RS00075 0.65 -0.8
15,600 - LU632_RS00075 0.65 -0.9
15,620 - LU632_RS00075 0.67 +0.2
15,728 + LU632_RS00075 0.78 -0.1
15,741 - LU632_RS00075 0.79 -0.4

Or see this region's nucleotide sequence