Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00015

Experiment: Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 5 Petiole 1 (TE2-S-C5-P1)
2,493	+				-1.6
2,496	-				+0.9
2,496	-				+0.2
2,546	-				+1.4
2,611	+				+0.1
2,779	-	recF	LU632_RS00015	0.12	-2.0
2,781	-	recF	LU632_RS00015	0.12	-2.9
2,781	-	recF	LU632_RS00015	0.12	+0.2
2,867	+	recF	LU632_RS00015	0.20	-1.8
2,867	+	recF	LU632_RS00015	0.20	-0.9
2,937	-	recF	LU632_RS00015	0.27	-2.0
3,040	-	recF	LU632_RS00015	0.36	-1.4
3,052	-	recF	LU632_RS00015	0.37	-1.4
3,231	+	recF	LU632_RS00015	0.54	-1.5
3,263	+	recF	LU632_RS00015	0.57	+0.4
3,384	+	recF	LU632_RS00015	0.68	-1.3
3,385	-	recF	LU632_RS00015	0.68	-0.7
3,385	-	recF	LU632_RS00015	0.68	-3.0
3,385	-	recF	LU632_RS00015	0.68	-1.6
3,420	-	recF	LU632_RS00015	0.71	+1.2
3,697	+				-1.6