Strain Fitness in Erwinia amylovora T8 around OLJFJH_18265

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_18260 and OLJFJH_18265 are separated by 295 nucleotidesOLJFJH_18265 and OLJFJH_18270 are separated by 144 nucleotidesOLJFJH_18270 and OLJFJH_18275 are separated by 305 nucleotides OLJFJH_18260: OLJFJH_18260 - IclR family transcriptional regulator, at 3,835,302 to 3,836,093 _18260 OLJFJH_18265: OLJFJH_18265 - YaiA, at 3,836,389 to 3,836,580 _18265 OLJFJH_18270: OLJFJH_18270 - shikimate kinase AroL, at 3,836,725 to 3,837,249 _18270 OLJFJH_18275: OLJFJH_18275 - DUF2076 domain-containing protein, at 3,837,555 to 3,838,256 _18275 Position (kb) 3836 3837Strain fitness (log2 ratio) -2 -1 0 1at 3835.631 kb on + strand, within OLJFJH_18260at 3835.755 kb on + strand, within OLJFJH_18260at 3835.761 kb on - strand, within OLJFJH_18260at 3835.787 kb on + strand, within OLJFJH_18260at 3835.787 kb on + strand, within OLJFJH_18260at 3835.787 kb on + strand, within OLJFJH_18260at 3835.788 kb on - strand, within OLJFJH_18260at 3835.788 kb on - strand, within OLJFJH_18260at 3835.864 kb on + strand, within OLJFJH_18260at 3836.060 kb on + strandat 3836.241 kb on + strandat 3836.359 kb on + strandat 3836.391 kb on - strandat 3836.540 kb on - strand, within OLJFJH_18265at 3836.595 kb on + strandat 3836.605 kb on + strandat 3836.605 kb on + strandat 3836.606 kb on - strandat 3836.609 kb on + strandat 3836.611 kb on + strandat 3836.635 kb on + strandat 3836.640 kb on - strandat 3836.691 kb on - strandat 3836.714 kb on - strandat 3836.770 kb on + strandat 3836.788 kb on + strand, within OLJFJH_18270at 3836.788 kb on + strand, within OLJFJH_18270at 3836.788 kb on + strand, within OLJFJH_18270at 3836.791 kb on - strand, within OLJFJH_18270at 3836.824 kb on + strand, within OLJFJH_18270at 3836.954 kb on + strand, within OLJFJH_18270at 3836.982 kb on - strand, within OLJFJH_18270at 3837.328 kb on - strandat 3837.435 kb on - strandat 3837.498 kb on + strandat 3837.499 kb on - strandat 3837.499 kb on - strandat 3837.499 kb on - strandat 3837.554 kb on + strandat 3837.577 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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3,835,631 + OLJFJH_18260 0.42 -1.4
3,835,755 + OLJFJH_18260 0.57 -1.5
3,835,761 - OLJFJH_18260 0.58 +0.4
3,835,787 + OLJFJH_18260 0.61 +0.7
3,835,787 + OLJFJH_18260 0.61 +0.8
3,835,787 + OLJFJH_18260 0.61 -1.3
3,835,788 - OLJFJH_18260 0.61 +1.6
3,835,788 - OLJFJH_18260 0.61 +1.6
3,835,864 + OLJFJH_18260 0.71 -0.2
3,836,060 + -1.6
3,836,241 + -0.5
3,836,359 + +0.1
3,836,391 - -0.8
3,836,540 - OLJFJH_18265 0.79 -0.8
3,836,595 + -0.3
3,836,605 + +0.0
3,836,605 + +0.2
3,836,606 - +0.0
3,836,609 + +0.9
3,836,611 + +0.1
3,836,635 + +0.2
3,836,640 - +0.6
3,836,691 - +0.1
3,836,714 - +0.0
3,836,770 + -2.0
3,836,788 + OLJFJH_18270 0.12 -0.1
3,836,788 + OLJFJH_18270 0.12 +0.6
3,836,788 + OLJFJH_18270 0.12 -2.6
3,836,791 - OLJFJH_18270 0.13 -0.7
3,836,824 + OLJFJH_18270 0.19 -0.6
3,836,954 + OLJFJH_18270 0.44 +0.1
3,836,982 - OLJFJH_18270 0.49 +0.3
3,837,328 - -1.3
3,837,435 - +0.4
3,837,498 + -0.7
3,837,499 - -0.6
3,837,499 - -0.3
3,837,499 - -1.4
3,837,554 + +0.8
3,837,577 + -0.5

Or see this region's nucleotide sequence