Strain Fitness in Erwinia amylovora T8 around OLJFJH_17630

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_17620 and OLJFJH_17625 overlap by 1 nucleotidesOLJFJH_17625 and OLJFJH_17630 are separated by 147 nucleotidesOLJFJH_17630 and OLJFJH_17635 overlap by 4 nucleotides OLJFJH_17620: OLJFJH_17620 - peptidylprolyl isomerase B, at 3,709,002 to 3,709,496 _17620 OLJFJH_17625: OLJFJH_17625 - UDP-2 3-diacylglucosamine diphosphatase, at 3,709,496 to 3,710,212 _17625 OLJFJH_17630: OLJFJH_17630 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 3,710,360 to 3,710,869 _17630 OLJFJH_17635: OLJFJH_17635 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 3,710,866 to 3,711,933 _17635 Position (kb) 3710 3711Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3710.230 kb on + strandat 3710.336 kb on + strandat 3710.337 kb on - strandat 3710.393 kb on - strandat 3710.673 kb on - strand, within OLJFJH_17630at 3710.725 kb on + strand, within OLJFJH_17630at 3710.885 kb on + strandat 3710.885 kb on + strandat 3710.886 kb on - strandat 3710.886 kb on - strandat 3710.886 kb on - strandat 3710.886 kb on - strandat 3711.304 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.520 kb on + strand, within OLJFJH_17635at 3711.521 kb on - strand, within OLJFJH_17635at 3711.521 kb on - strand, within OLJFJH_17635at 3711.521 kb on - strand, within OLJFJH_17635at 3711.779 kb on - strand, within OLJFJH_17635at 3711.780 kb on + strand, within OLJFJH_17635at 3711.781 kb on - strand, within OLJFJH_17635at 3711.783 kb on + strand, within OLJFJH_17635at 3711.783 kb on + strand, within OLJFJH_17635at 3711.784 kb on - strand, within OLJFJH_17635at 3711.849 kb on + strandat 3711.849 kb on + strandat 3711.849 kb on + strandat 3711.849 kb on + strandat 3711.850 kb on - strandat 3711.850 kb on - strandat 3711.850 kb on - strandat 3711.850 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
remove
3,710,230 + +0.3
3,710,336 + -0.4
3,710,337 - -2.4
3,710,393 - -1.8
3,710,673 - OLJFJH_17630 0.61 -2.3
3,710,725 + OLJFJH_17630 0.72 -3.6
3,710,885 + -3.2
3,710,885 + -3.5
3,710,886 - -2.9
3,710,886 - -2.9
3,710,886 - -4.0
3,710,886 - -3.5
3,711,304 + OLJFJH_17635 0.41 -3.9
3,711,520 + OLJFJH_17635 0.61 -1.2
3,711,520 + OLJFJH_17635 0.61 -3.5
3,711,520 + OLJFJH_17635 0.61 -1.8
3,711,520 + OLJFJH_17635 0.61 -2.2
3,711,520 + OLJFJH_17635 0.61 -2.7
3,711,520 + OLJFJH_17635 0.61 -1.7
3,711,520 + OLJFJH_17635 0.61 -3.3
3,711,520 + OLJFJH_17635 0.61 -3.8
3,711,520 + OLJFJH_17635 0.61 -4.0
3,711,520 + OLJFJH_17635 0.61 -3.3
3,711,520 + OLJFJH_17635 0.61 -2.7
3,711,521 - OLJFJH_17635 0.61 +0.5
3,711,521 - OLJFJH_17635 0.61 -2.4
3,711,521 - OLJFJH_17635 0.61 -2.9
3,711,779 - OLJFJH_17635 0.85 -4.3
3,711,780 + OLJFJH_17635 0.86 -4.3
3,711,781 - OLJFJH_17635 0.86 -2.6
3,711,783 + OLJFJH_17635 0.86 -2.4
3,711,783 + OLJFJH_17635 0.86 -3.9
3,711,784 - OLJFJH_17635 0.86 -2.6
3,711,849 + -3.1
3,711,849 + -2.3
3,711,849 + -3.2
3,711,849 + -1.5
3,711,850 - -1.7
3,711,850 - -3.0
3,711,850 - -3.5
3,711,850 - -4.4

Or see this region's nucleotide sequence