Strain Fitness in Erwinia amylovora T8 around OLJFJH_16955

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_16950 and OLJFJH_16955 are separated by 231 nucleotidesOLJFJH_16955 and OLJFJH_16960 are separated by 17 nucleotides OLJFJH_16950: OLJFJH_16950 - 2-oxoglutarate dehydrogenase E1 component, at 3,582,821 to 3,585,628 _16950 OLJFJH_16955: OLJFJH_16955 - succinate dehydrogenase iron-sulfur subunit, at 3,585,860 to 3,586,576 _16955 OLJFJH_16960: OLJFJH_16960 - succinate dehydrogenase flavoprotein subunit, at 3,586,594 to 3,588,360 _16960 Position (kb) 3585 3586 3587Strain fitness (log2 ratio) -2 -1 0 1 2at 3585.040 kb on - strand, within OLJFJH_16950at 3585.113 kb on - strand, within OLJFJH_16950at 3585.115 kb on - strand, within OLJFJH_16950at 3585.115 kb on - strand, within OLJFJH_16950at 3585.723 kb on - strandat 3585.814 kb on - strandat 3585.933 kb on - strand, within OLJFJH_16955at 3585.950 kb on - strand, within OLJFJH_16955at 3585.950 kb on - strand, within OLJFJH_16955at 3585.969 kb on - strand, within OLJFJH_16955at 3586.236 kb on + strand, within OLJFJH_16955at 3586.352 kb on - strand, within OLJFJH_16955at 3586.352 kb on - strand, within OLJFJH_16955at 3586.583 kb on - strandat 3586.583 kb on - strandat 3586.595 kb on + strandat 3586.596 kb on - strandat 3586.596 kb on - strandat 3586.596 kb on - strandat 3586.700 kb on - strandat 3587.131 kb on + strand, within OLJFJH_16960at 3587.132 kb on - strand, within OLJFJH_16960at 3587.132 kb on - strand, within OLJFJH_16960at 3587.297 kb on + strand, within OLJFJH_16960at 3587.297 kb on + strand, within OLJFJH_16960at 3587.298 kb on - strand, within OLJFJH_16960at 3587.298 kb on - strand, within OLJFJH_16960at 3587.544 kb on + strand, within OLJFJH_16960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
remove
3,585,040 - OLJFJH_16950 0.79 -2.0
3,585,113 - OLJFJH_16950 0.82 -1.4
3,585,115 - OLJFJH_16950 0.82 -1.4
3,585,115 - OLJFJH_16950 0.82 -1.0
3,585,723 - -0.1
3,585,814 - +0.8
3,585,933 - OLJFJH_16955 0.10 -1.2
3,585,950 - OLJFJH_16955 0.13 -1.1
3,585,950 - OLJFJH_16955 0.13 -1.4
3,585,969 - OLJFJH_16955 0.15 +0.2
3,586,236 + OLJFJH_16955 0.52 -2.3
3,586,352 - OLJFJH_16955 0.69 -0.0
3,586,352 - OLJFJH_16955 0.69 -1.5
3,586,583 - -1.4
3,586,583 - -0.7
3,586,595 + -1.7
3,586,596 - +1.8
3,586,596 - -0.7
3,586,596 - -0.3
3,586,700 - -1.7
3,587,131 + OLJFJH_16960 0.30 -1.0
3,587,132 - OLJFJH_16960 0.30 -0.7
3,587,132 - OLJFJH_16960 0.30 -0.8
3,587,297 + OLJFJH_16960 0.40 +0.8
3,587,297 + OLJFJH_16960 0.40 +1.0
3,587,298 - OLJFJH_16960 0.40 -0.4
3,587,298 - OLJFJH_16960 0.40 -0.2
3,587,544 + OLJFJH_16960 0.54 +0.6

Or see this region's nucleotide sequence