Strain Fitness in Erwinia amylovora T8 around OLJFJH_12965

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12960 and OLJFJH_12965 are separated by 54 nucleotidesOLJFJH_12965 and OLJFJH_12970 are separated by 175 nucleotides OLJFJH_12960: OLJFJH_12960 - 2OG-Fe dioxygenase family protein, at 2,729,528 to 2,730,274 _12960 OLJFJH_12965: OLJFJH_12965 - Lysine exporter LysO, at 2,730,329 to 2,731,219 _12965 OLJFJH_12970: OLJFJH_12970 - AI-2E family transporter, at 2,731,395 to 2,732,513 _12970 Position (kb) 2730 2731 2732Strain fitness (log2 ratio) -1 0 1 2at 2729.332 kb on + strandat 2729.605 kb on + strand, within OLJFJH_12960at 2729.605 kb on + strand, within OLJFJH_12960at 2729.605 kb on + strand, within OLJFJH_12960at 2729.635 kb on + strand, within OLJFJH_12960at 2729.635 kb on + strand, within OLJFJH_12960at 2729.673 kb on - strand, within OLJFJH_12960at 2729.731 kb on + strand, within OLJFJH_12960at 2729.910 kb on - strand, within OLJFJH_12960at 2729.928 kb on + strand, within OLJFJH_12960at 2729.965 kb on + strand, within OLJFJH_12960at 2730.018 kb on + strand, within OLJFJH_12960at 2730.018 kb on + strand, within OLJFJH_12960at 2730.019 kb on - strand, within OLJFJH_12960at 2730.069 kb on + strand, within OLJFJH_12960at 2730.069 kb on + strand, within OLJFJH_12960at 2730.092 kb on + strand, within OLJFJH_12960at 2730.187 kb on - strand, within OLJFJH_12960at 2730.450 kb on + strand, within OLJFJH_12965at 2730.622 kb on + strand, within OLJFJH_12965at 2730.878 kb on - strand, within OLJFJH_12965at 2731.396 kb on + strandat 2731.710 kb on + strand, within OLJFJH_12970at 2731.809 kb on + strand, within OLJFJH_12970at 2731.878 kb on + strand, within OLJFJH_12970at 2731.973 kb on - strand, within OLJFJH_12970at 2732.005 kb on + strand, within OLJFJH_12970at 2732.006 kb on - strand, within OLJFJH_12970at 2732.049 kb on - strand, within OLJFJH_12970at 2732.049 kb on - strand, within OLJFJH_12970at 2732.052 kb on + strand, within OLJFJH_12970at 2732.052 kb on + strand, within OLJFJH_12970at 2732.053 kb on - strand, within OLJFJH_12970at 2732.053 kb on - strand, within OLJFJH_12970

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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2,729,332 + +0.9
2,729,605 + OLJFJH_12960 0.10 -1.6
2,729,605 + OLJFJH_12960 0.10 +1.0
2,729,605 + OLJFJH_12960 0.10 +0.2
2,729,635 + OLJFJH_12960 0.14 +0.5
2,729,635 + OLJFJH_12960 0.14 -0.6
2,729,673 - OLJFJH_12960 0.19 +0.1
2,729,731 + OLJFJH_12960 0.27 +0.3
2,729,910 - OLJFJH_12960 0.51 +0.4
2,729,928 + OLJFJH_12960 0.54 -0.2
2,729,965 + OLJFJH_12960 0.59 +0.2
2,730,018 + OLJFJH_12960 0.66 +1.0
2,730,018 + OLJFJH_12960 0.66 +0.2
2,730,019 - OLJFJH_12960 0.66 +0.9
2,730,069 + OLJFJH_12960 0.72 -0.1
2,730,069 + OLJFJH_12960 0.72 +0.2
2,730,092 + OLJFJH_12960 0.76 +1.1
2,730,187 - OLJFJH_12960 0.88 -0.6
2,730,450 + OLJFJH_12965 0.14 -1.6
2,730,622 + OLJFJH_12965 0.33 -1.2
2,730,878 - OLJFJH_12965 0.62 -1.2
2,731,396 + +1.3
2,731,710 + OLJFJH_12970 0.28 -0.3
2,731,809 + OLJFJH_12970 0.37 -0.1
2,731,878 + OLJFJH_12970 0.43 +0.6
2,731,973 - OLJFJH_12970 0.52 -0.5
2,732,005 + OLJFJH_12970 0.55 +2.6
2,732,006 - OLJFJH_12970 0.55 -0.7
2,732,049 - OLJFJH_12970 0.58 -0.0
2,732,049 - OLJFJH_12970 0.58 -0.5
2,732,052 + OLJFJH_12970 0.59 +0.5
2,732,052 + OLJFJH_12970 0.59 +0.5
2,732,053 - OLJFJH_12970 0.59 -1.2
2,732,053 - OLJFJH_12970 0.59 -0.4

Or see this region's nucleotide sequence