Strain Fitness in Erwinia amylovora T8 around OLJFJH_12070

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12065 and OLJFJH_12070 are separated by 4 nucleotidesOLJFJH_12070 and OLJFJH_12075 overlap by 4 nucleotides OLJFJH_12065: OLJFJH_12065 - colanic acid biosynthesis pyruvyl transferase WcaK, at 2,539,643 to 2,540,890 _12065 OLJFJH_12070: OLJFJH_12070 - Amylovoran biosynthesis glycosyltransferase AmsK, at 2,540,895 to 2,542,118 _12070 OLJFJH_12075: OLJFJH_12075 - Amylovoran biosynthesis protein AmsL, at 2,542,115 to 2,543,455 _12075 Position (kb) 2540 2541 2542 2543Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2539.966 kb on - strand, within OLJFJH_12065at 2539.992 kb on + strand, within OLJFJH_12065at 2540.075 kb on + strand, within OLJFJH_12065at 2540.075 kb on + strand, within OLJFJH_12065at 2540.076 kb on - strand, within OLJFJH_12065at 2540.077 kb on + strand, within OLJFJH_12065at 2540.257 kb on + strand, within OLJFJH_12065at 2540.258 kb on - strand, within OLJFJH_12065at 2540.258 kb on - strand, within OLJFJH_12065at 2540.390 kb on + strand, within OLJFJH_12065at 2540.417 kb on - strand, within OLJFJH_12065at 2540.459 kb on - strand, within OLJFJH_12065at 2540.476 kb on + strand, within OLJFJH_12065at 2540.477 kb on - strand, within OLJFJH_12065at 2540.480 kb on + strand, within OLJFJH_12065at 2540.481 kb on - strand, within OLJFJH_12065at 2540.522 kb on + strand, within OLJFJH_12065at 2540.678 kb on + strand, within OLJFJH_12065at 2540.740 kb on - strand, within OLJFJH_12065at 2540.795 kb on + strandat 2540.805 kb on + strandat 2540.806 kb on - strandat 2540.977 kb on + strandat 2541.048 kb on + strand, within OLJFJH_12070at 2541.050 kb on + strand, within OLJFJH_12070at 2541.089 kb on + strand, within OLJFJH_12070at 2541.133 kb on + strand, within OLJFJH_12070at 2541.257 kb on + strand, within OLJFJH_12070at 2541.410 kb on - strand, within OLJFJH_12070at 2541.536 kb on + strand, within OLJFJH_12070at 2541.536 kb on + strand, within OLJFJH_12070at 2541.553 kb on + strand, within OLJFJH_12070at 2541.569 kb on + strand, within OLJFJH_12070at 2541.569 kb on + strand, within OLJFJH_12070at 2541.569 kb on + strand, within OLJFJH_12070at 2541.664 kb on - strand, within OLJFJH_12070at 2541.669 kb on - strand, within OLJFJH_12070at 2541.923 kb on + strand, within OLJFJH_12070at 2542.018 kb on + strandat 2542.018 kb on + strandat 2542.019 kb on - strandat 2542.019 kb on - strandat 2542.019 kb on - strandat 2542.176 kb on + strandat 2542.252 kb on + strand, within OLJFJH_12075at 2542.298 kb on + strand, within OLJFJH_12075at 2542.299 kb on - strand, within OLJFJH_12075at 2542.299 kb on - strand, within OLJFJH_12075at 2542.299 kb on - strand, within OLJFJH_12075at 2542.299 kb on - strand, within OLJFJH_12075at 2542.299 kb on - strand, within OLJFJH_12075at 2542.300 kb on + strand, within OLJFJH_12075at 2542.347 kb on - strand, within OLJFJH_12075at 2542.366 kb on + strand, within OLJFJH_12075at 2542.367 kb on - strand, within OLJFJH_12075at 2542.456 kb on + strand, within OLJFJH_12075at 2542.727 kb on + strand, within OLJFJH_12075at 2542.786 kb on + strand, within OLJFJH_12075at 2542.845 kb on - strand, within OLJFJH_12075at 2542.866 kb on + strand, within OLJFJH_12075at 2543.009 kb on + strand, within OLJFJH_12075at 2543.010 kb on - strand, within OLJFJH_12075at 2543.010 kb on - strand, within OLJFJH_12075at 2543.010 kb on - strand, within OLJFJH_12075at 2543.038 kb on - strand, within OLJFJH_12075at 2543.044 kb on - strand, within OLJFJH_12075at 2543.050 kb on - strand, within OLJFJH_12075at 2543.052 kb on + strand, within OLJFJH_12075at 2543.052 kb on + strand, within OLJFJH_12075at 2543.052 kb on + strand, within OLJFJH_12075at 2543.052 kb on + strand, within OLJFJH_12075at 2543.052 kb on + strand, within OLJFJH_12075at 2543.052 kb on + strand, within OLJFJH_12075at 2543.053 kb on - strand, within OLJFJH_12075at 2543.053 kb on - strand, within OLJFJH_12075

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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2,539,966 - OLJFJH_12065 0.26 -3.4
2,539,992 + OLJFJH_12065 0.28 -3.1
2,540,075 + OLJFJH_12065 0.35 -1.4
2,540,075 + OLJFJH_12065 0.35 -2.7
2,540,076 - OLJFJH_12065 0.35 -3.0
2,540,077 + OLJFJH_12065 0.35 -2.2
2,540,257 + OLJFJH_12065 0.49 -3.1
2,540,258 - OLJFJH_12065 0.49 -3.9
2,540,258 - OLJFJH_12065 0.49 -2.9
2,540,390 + OLJFJH_12065 0.60 -2.8
2,540,417 - OLJFJH_12065 0.62 -2.6
2,540,459 - OLJFJH_12065 0.65 -3.5
2,540,476 + OLJFJH_12065 0.67 -2.9
2,540,477 - OLJFJH_12065 0.67 -4.1
2,540,480 + OLJFJH_12065 0.67 -3.0
2,540,481 - OLJFJH_12065 0.67 -3.3
2,540,522 + OLJFJH_12065 0.70 -2.7
2,540,678 + OLJFJH_12065 0.83 -1.0
2,540,740 - OLJFJH_12065 0.88 -2.5
2,540,795 + -3.4
2,540,805 + -2.1
2,540,806 - -3.4
2,540,977 + -3.1
2,541,048 + OLJFJH_12070 0.12 -2.9
2,541,050 + OLJFJH_12070 0.13 -5.0
2,541,089 + OLJFJH_12070 0.16 -3.5
2,541,133 + OLJFJH_12070 0.19 -4.6
2,541,257 + OLJFJH_12070 0.30 -2.7
2,541,410 - OLJFJH_12070 0.42 -3.7
2,541,536 + OLJFJH_12070 0.52 -2.6
2,541,536 + OLJFJH_12070 0.52 -4.2
2,541,553 + OLJFJH_12070 0.54 -1.6
2,541,569 + OLJFJH_12070 0.55 -3.1
2,541,569 + OLJFJH_12070 0.55 -3.4
2,541,569 + OLJFJH_12070 0.55 -3.0
2,541,664 - OLJFJH_12070 0.63 -2.8
2,541,669 - OLJFJH_12070 0.63 -2.9
2,541,923 + OLJFJH_12070 0.84 -3.2
2,542,018 + -2.7
2,542,018 + -2.6
2,542,019 - -4.0
2,542,019 - -1.0
2,542,019 - -1.0
2,542,176 + -3.2
2,542,252 + OLJFJH_12075 0.10 -2.8
2,542,298 + OLJFJH_12075 0.14 -0.9
2,542,299 - OLJFJH_12075 0.14 -4.6
2,542,299 - OLJFJH_12075 0.14 -1.4
2,542,299 - OLJFJH_12075 0.14 -3.6
2,542,299 - OLJFJH_12075 0.14 -1.3
2,542,299 - OLJFJH_12075 0.14 -1.6
2,542,300 + OLJFJH_12075 0.14 -3.9
2,542,347 - OLJFJH_12075 0.17 -2.3
2,542,366 + OLJFJH_12075 0.19 -4.1
2,542,367 - OLJFJH_12075 0.19 -3.2
2,542,456 + OLJFJH_12075 0.25 -3.3
2,542,727 + OLJFJH_12075 0.46 -1.4
2,542,786 + OLJFJH_12075 0.50 -3.1
2,542,845 - OLJFJH_12075 0.54 -3.3
2,542,866 + OLJFJH_12075 0.56 -2.3
2,543,009 + OLJFJH_12075 0.67 -4.1
2,543,010 - OLJFJH_12075 0.67 -4.4
2,543,010 - OLJFJH_12075 0.67 -3.0
2,543,010 - OLJFJH_12075 0.67 -4.3
2,543,038 - OLJFJH_12075 0.69 -3.5
2,543,044 - OLJFJH_12075 0.69 -1.7
2,543,050 - OLJFJH_12075 0.70 -3.7
2,543,052 + OLJFJH_12075 0.70 -3.9
2,543,052 + OLJFJH_12075 0.70 -3.0
2,543,052 + OLJFJH_12075 0.70 -2.6
2,543,052 + OLJFJH_12075 0.70 -1.9
2,543,052 + OLJFJH_12075 0.70 -4.3
2,543,052 + OLJFJH_12075 0.70 -5.2
2,543,053 - OLJFJH_12075 0.70 -2.2
2,543,053 - OLJFJH_12075 0.70 -4.1

Or see this region's nucleotide sequence