Strain Fitness in Erwinia amylovora T8 around OLJFJH_12030

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12025 and OLJFJH_12030 are separated by 15 nucleotidesOLJFJH_12030 and OLJFJH_12035 are separated by 12 nucleotides OLJFJH_12025: OLJFJH_12025 - Amylovoran export outer membrane protein AmsH, at 2,529,205 to 2,530,347 _12025 OLJFJH_12030: OLJFJH_12030 - putative low molecular weight protein-tyrosine-phosphatase AmsI, at 2,530,363 to 2,530,797 _12030 OLJFJH_12035: OLJFJH_12035 - Putative tyrosine-protein kinase AmsA, at 2,530,810 to 2,532,990 _12035 Position (kb) 2530 2531Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2529.408 kb on + strand, within OLJFJH_12025at 2529.466 kb on + strand, within OLJFJH_12025at 2529.497 kb on + strand, within OLJFJH_12025at 2529.595 kb on + strand, within OLJFJH_12025at 2529.676 kb on + strand, within OLJFJH_12025at 2529.676 kb on + strand, within OLJFJH_12025at 2529.677 kb on - strand, within OLJFJH_12025at 2529.677 kb on - strand, within OLJFJH_12025at 2529.677 kb on - strand, within OLJFJH_12025at 2529.733 kb on + strand, within OLJFJH_12025at 2529.734 kb on - strand, within OLJFJH_12025at 2529.737 kb on + strand, within OLJFJH_12025at 2529.737 kb on + strand, within OLJFJH_12025at 2529.738 kb on - strand, within OLJFJH_12025at 2529.738 kb on - strand, within OLJFJH_12025at 2529.956 kb on - strand, within OLJFJH_12025at 2530.002 kb on + strand, within OLJFJH_12025at 2530.144 kb on - strand, within OLJFJH_12025at 2530.155 kb on + strand, within OLJFJH_12025at 2530.156 kb on - strand, within OLJFJH_12025at 2530.156 kb on - strand, within OLJFJH_12025at 2530.167 kb on + strand, within OLJFJH_12025at 2530.168 kb on - strand, within OLJFJH_12025at 2530.234 kb on + strandat 2530.234 kb on + strandat 2530.306 kb on + strandat 2530.431 kb on + strand, within OLJFJH_12030at 2530.484 kb on + strand, within OLJFJH_12030at 2530.553 kb on + strand, within OLJFJH_12030at 2530.553 kb on + strand, within OLJFJH_12030at 2530.553 kb on + strand, within OLJFJH_12030at 2530.554 kb on - strand, within OLJFJH_12030at 2530.575 kb on + strand, within OLJFJH_12030at 2530.575 kb on + strand, within OLJFJH_12030at 2530.575 kb on + strand, within OLJFJH_12030at 2530.575 kb on + strand, within OLJFJH_12030at 2530.575 kb on + strand, within OLJFJH_12030at 2530.575 kb on + strand, within OLJFJH_12030at 2530.576 kb on - strand, within OLJFJH_12030at 2530.576 kb on - strand, within OLJFJH_12030at 2530.596 kb on + strand, within OLJFJH_12030at 2530.596 kb on + strand, within OLJFJH_12030at 2530.631 kb on + strand, within OLJFJH_12030at 2530.632 kb on - strand, within OLJFJH_12030at 2530.632 kb on - strand, within OLJFJH_12030at 2530.659 kb on + strand, within OLJFJH_12030at 2530.932 kb on + strandat 2530.952 kb on - strandat 2531.025 kb on - strandat 2531.100 kb on + strand, within OLJFJH_12035at 2531.195 kb on + strand, within OLJFJH_12035at 2531.196 kb on - strand, within OLJFJH_12035at 2531.232 kb on + strand, within OLJFJH_12035at 2531.232 kb on + strand, within OLJFJH_12035at 2531.233 kb on - strand, within OLJFJH_12035at 2531.233 kb on - strand, within OLJFJH_12035at 2531.270 kb on + strand, within OLJFJH_12035at 2531.271 kb on - strand, within OLJFJH_12035at 2531.276 kb on + strand, within OLJFJH_12035at 2531.293 kb on + strand, within OLJFJH_12035at 2531.294 kb on - strand, within OLJFJH_12035at 2531.294 kb on - strand, within OLJFJH_12035at 2531.294 kb on - strand, within OLJFJH_12035at 2531.294 kb on - strand, within OLJFJH_12035at 2531.321 kb on + strand, within OLJFJH_12035at 2531.379 kb on + strand, within OLJFJH_12035at 2531.380 kb on - strand, within OLJFJH_12035at 2531.382 kb on + strand, within OLJFJH_12035at 2531.440 kb on - strand, within OLJFJH_12035at 2531.442 kb on + strand, within OLJFJH_12035at 2531.499 kb on - strand, within OLJFJH_12035at 2531.509 kb on + strand, within OLJFJH_12035at 2531.535 kb on - strand, within OLJFJH_12035at 2531.567 kb on - strand, within OLJFJH_12035at 2531.567 kb on - strand, within OLJFJH_12035at 2531.645 kb on + strand, within OLJFJH_12035

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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2,529,408 + OLJFJH_12025 0.18 -1.5
2,529,466 + OLJFJH_12025 0.23 -1.5
2,529,497 + OLJFJH_12025 0.26 -1.5
2,529,595 + OLJFJH_12025 0.34 -1.9
2,529,676 + OLJFJH_12025 0.41 -1.5
2,529,676 + OLJFJH_12025 0.41 -2.2
2,529,677 - OLJFJH_12025 0.41 -2.3
2,529,677 - OLJFJH_12025 0.41 -1.5
2,529,677 - OLJFJH_12025 0.41 -3.3
2,529,733 + OLJFJH_12025 0.46 -0.8
2,529,734 - OLJFJH_12025 0.46 -1.9
2,529,737 + OLJFJH_12025 0.47 -2.2
2,529,737 + OLJFJH_12025 0.47 -3.4
2,529,738 - OLJFJH_12025 0.47 -2.4
2,529,738 - OLJFJH_12025 0.47 -2.1
2,529,956 - OLJFJH_12025 0.66 -2.0
2,530,002 + OLJFJH_12025 0.70 -2.2
2,530,144 - OLJFJH_12025 0.82 -2.0
2,530,155 + OLJFJH_12025 0.83 -1.7
2,530,156 - OLJFJH_12025 0.83 -0.2
2,530,156 - OLJFJH_12025 0.83 -2.2
2,530,167 + OLJFJH_12025 0.84 -2.9
2,530,168 - OLJFJH_12025 0.84 -1.1
2,530,234 + -0.8
2,530,234 + -1.3
2,530,306 + -1.3
2,530,431 + OLJFJH_12030 0.16 -2.9
2,530,484 + OLJFJH_12030 0.28 -2.4
2,530,553 + OLJFJH_12030 0.44 -2.6
2,530,553 + OLJFJH_12030 0.44 -1.4
2,530,553 + OLJFJH_12030 0.44 -2.1
2,530,554 - OLJFJH_12030 0.44 -2.7
2,530,575 + OLJFJH_12030 0.49 -2.6
2,530,575 + OLJFJH_12030 0.49 -1.8
2,530,575 + OLJFJH_12030 0.49 -2.3
2,530,575 + OLJFJH_12030 0.49 -2.2
2,530,575 + OLJFJH_12030 0.49 -2.1
2,530,575 + OLJFJH_12030 0.49 -1.6
2,530,576 - OLJFJH_12030 0.49 -1.1
2,530,576 - OLJFJH_12030 0.49 -0.0
2,530,596 + OLJFJH_12030 0.54 -1.8
2,530,596 + OLJFJH_12030 0.54 -1.9
2,530,631 + OLJFJH_12030 0.62 -1.6
2,530,632 - OLJFJH_12030 0.62 -2.5
2,530,632 - OLJFJH_12030 0.62 -2.5
2,530,659 + OLJFJH_12030 0.68 -2.4
2,530,932 + -3.1
2,530,952 - -1.9
2,531,025 - -0.8
2,531,100 + OLJFJH_12035 0.13 -1.0
2,531,195 + OLJFJH_12035 0.18 -1.3
2,531,196 - OLJFJH_12035 0.18 -3.0
2,531,232 + OLJFJH_12035 0.19 -2.1
2,531,232 + OLJFJH_12035 0.19 -1.8
2,531,233 - OLJFJH_12035 0.19 -3.2
2,531,233 - OLJFJH_12035 0.19 -1.8
2,531,270 + OLJFJH_12035 0.21 -1.8
2,531,271 - OLJFJH_12035 0.21 -2.8
2,531,276 + OLJFJH_12035 0.21 +0.2
2,531,293 + OLJFJH_12035 0.22 -2.4
2,531,294 - OLJFJH_12035 0.22 -2.8
2,531,294 - OLJFJH_12035 0.22 -0.2
2,531,294 - OLJFJH_12035 0.22 -3.0
2,531,294 - OLJFJH_12035 0.22 -1.3
2,531,321 + OLJFJH_12035 0.23 -2.8
2,531,379 + OLJFJH_12035 0.26 -2.4
2,531,380 - OLJFJH_12035 0.26 -4.0
2,531,382 + OLJFJH_12035 0.26 -1.8
2,531,440 - OLJFJH_12035 0.29 -4.1
2,531,442 + OLJFJH_12035 0.29 -2.5
2,531,499 - OLJFJH_12035 0.32 -2.2
2,531,509 + OLJFJH_12035 0.32 -2.0
2,531,535 - OLJFJH_12035 0.33 -3.0
2,531,567 - OLJFJH_12035 0.35 -2.2
2,531,567 - OLJFJH_12035 0.35 -4.0
2,531,645 + OLJFJH_12035 0.38 -2.7

Or see this region's nucleotide sequence