Strain Fitness in Erwinia amylovora T8 around OLJFJH_10700

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10690 and OLJFJH_10695 are separated by 178 nucleotidesOLJFJH_10695 and OLJFJH_10700 are separated by 4 nucleotidesOLJFJH_10700 and OLJFJH_10705 are separated by 12 nucleotidesOLJFJH_10705 and OLJFJH_10710 are separated by 260 nucleotides OLJFJH_10690: OLJFJH_10690 - RHS domain-containing protein, at 2,210,864 to 2,212,357 _10690 OLJFJH_10695: OLJFJH_10695 - SMI1/KNR4 family protein, at 2,212,536 to 2,212,988 _10695 OLJFJH_10700: OLJFJH_10700 - type IV secretion protein Rhs, at 2,212,993 to 2,217,252 _10700 OLJFJH_10705: OLJFJH_10705 - DUF1795 domain-containing protein, at 2,217,265 to 2,217,717 _10705 OLJFJH_10710: OLJFJH_10710 - Non-ribosomal peptide synthetase, at 2,217,978 to 2,239,055 _10710 Position (kb) 2212 2213 2214 2215 2216 2217 2218Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2212.533 kb on + strandat 2212.534 kb on - strandat 2213.019 kb on + strandat 2213.038 kb on + strandat 2213.039 kb on - strandat 2213.063 kb on + strandat 2213.092 kb on - strandat 2213.194 kb on + strandat 2213.256 kb on + strandat 2213.291 kb on + strandat 2213.705 kb on + strand, within OLJFJH_10700at 2218.082 kb on + strandat 2218.099 kb on + strandat 2218.100 kb on - strandat 2218.100 kb on - strandat 2218.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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2,212,533 + +0.1
2,212,534 - +0.8
2,213,019 + -4.2
2,213,038 + -0.5
2,213,039 - -0.2
2,213,063 + -2.1
2,213,092 - +0.1
2,213,194 + -1.5
2,213,256 + -2.5
2,213,291 + -4.3
2,213,705 + OLJFJH_10700 0.17 -0.9
2,218,082 + +0.1
2,218,099 + +1.2
2,218,100 - -0.3
2,218,100 - +0.5
2,218,155 - +0.0

Or see this region's nucleotide sequence