Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_10690 and OLJFJH_10695 are separated by 178 nucleotides OLJFJH_10695 and OLJFJH_10700 are separated by 4 nucleotides OLJFJH_10700 and OLJFJH_10705 are separated by 12 nucleotides OLJFJH_10705 and OLJFJH_10710 are separated by 260 nucleotides
OLJFJH_10690: OLJFJH_10690 - RHS domain-containing protein, at 2,210,864 to 2,212,357
_10690
OLJFJH_10695: OLJFJH_10695 - SMI1/KNR4 family protein, at 2,212,536 to 2,212,988
_10695
OLJFJH_10700: OLJFJH_10700 - type IV secretion protein Rhs, at 2,212,993 to 2,217,252
_10700
OLJFJH_10705: OLJFJH_10705 - DUF1795 domain-containing protein, at 2,217,265 to 2,217,717
_10705
OLJFJH_10710: OLJFJH_10710 - Non-ribosomal peptide synthetase, at 2,217,978 to 2,239,055
_10710
Position (kb)
2212
2213
2214
2215
2216
2217
2218 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2212.533 kb on + strand at 2212.534 kb on - strand at 2213.019 kb on + strand at 2213.038 kb on + strand at 2213.039 kb on - strand at 2213.063 kb on + strand at 2213.092 kb on - strand at 2213.194 kb on + strand at 2213.256 kb on + strand at 2213.291 kb on + strand at 2213.705 kb on + strand, within OLJFJH_10700 at 2218.082 kb on + strand at 2218.099 kb on + strand at 2218.100 kb on - strand at 2218.100 kb on - strand at 2218.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6 remove 2,212,533 + +0.1 2,212,534 - +0.8 2,213,019 + -4.2 2,213,038 + -0.5 2,213,039 - -0.2 2,213,063 + -2.1 2,213,092 - +0.1 2,213,194 + -1.5 2,213,256 + -2.5 2,213,291 + -4.3 2,213,705 + OLJFJH_10700 0.17 -0.9 2,218,082 + +0.1 2,218,099 + +1.2 2,218,100 - -0.3 2,218,100 - +0.5 2,218,155 - +0.0
Or see this region's nucleotide sequence