Strain Fitness in Erwinia amylovora T8 around OLJFJH_09310

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09305 and OLJFJH_09310 are separated by 12 nucleotidesOLJFJH_09310 and OLJFJH_09315 are separated by 41 nucleotidesOLJFJH_09315 and OLJFJH_09320 are separated by 328 nucleotides OLJFJH_09305: OLJFJH_09305 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 1,927,709 to 1,929,424 _09305 OLJFJH_09310: OLJFJH_09310 - phosphoadenylyl-sulfate reductase, at 1,929,437 to 1,930,168 _09310 OLJFJH_09315: OLJFJH_09315 - YCII domain-containing protein, at 1,930,210 to 1,930,494 _09315 OLJFJH_09320: OLJFJH_09320 - siroheme synthase CysG, at 1,930,823 to 1,932,238 _09320 Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -3 -2 -1 0 1at 1928.486 kb on - strand, within OLJFJH_09305at 1928.486 kb on - strand, within OLJFJH_09305at 1928.486 kb on - strand, within OLJFJH_09305at 1928.501 kb on - strand, within OLJFJH_09305at 1928.510 kb on + strand, within OLJFJH_09305at 1928.510 kb on + strand, within OLJFJH_09305at 1928.510 kb on + strand, within OLJFJH_09305at 1928.510 kb on + strand, within OLJFJH_09305at 1928.510 kb on + strand, within OLJFJH_09305at 1928.511 kb on - strand, within OLJFJH_09305at 1928.511 kb on - strand, within OLJFJH_09305at 1928.511 kb on - strand, within OLJFJH_09305at 1928.551 kb on + strand, within OLJFJH_09305at 1928.637 kb on - strand, within OLJFJH_09305at 1928.721 kb on - strand, within OLJFJH_09305at 1928.728 kb on + strand, within OLJFJH_09305at 1928.941 kb on + strand, within OLJFJH_09305at 1929.124 kb on + strand, within OLJFJH_09305at 1929.124 kb on + strand, within OLJFJH_09305at 1929.124 kb on + strand, within OLJFJH_09305at 1929.125 kb on - strand, within OLJFJH_09305at 1929.245 kb on - strand, within OLJFJH_09305at 1929.433 kb on + strandat 1929.433 kb on + strandat 1929.433 kb on + strandat 1929.434 kb on - strandat 1929.434 kb on - strandat 1929.515 kb on - strand, within OLJFJH_09310at 1929.515 kb on - strand, within OLJFJH_09310at 1929.515 kb on - strand, within OLJFJH_09310at 1929.585 kb on + strand, within OLJFJH_09310at 1929.585 kb on + strand, within OLJFJH_09310at 1929.585 kb on + strand, within OLJFJH_09310at 1929.586 kb on - strand, within OLJFJH_09310at 1929.704 kb on - strand, within OLJFJH_09310at 1929.738 kb on + strand, within OLJFJH_09310at 1929.738 kb on + strand, within OLJFJH_09310at 1929.738 kb on + strand, within OLJFJH_09310at 1929.738 kb on + strand, within OLJFJH_09310at 1929.810 kb on + strand, within OLJFJH_09310at 1930.013 kb on + strand, within OLJFJH_09310at 1930.093 kb on + strand, within OLJFJH_09310at 1930.094 kb on - strand, within OLJFJH_09310at 1930.166 kb on + strandat 1930.167 kb on - strandat 1930.274 kb on + strand, within OLJFJH_09315at 1930.409 kb on + strand, within OLJFJH_09315at 1930.472 kb on + strandat 1930.472 kb on + strandat 1930.472 kb on + strandat 1930.473 kb on - strandat 1930.481 kb on - strandat 1930.481 kb on - strandat 1930.490 kb on + strandat 1930.490 kb on + strandat 1930.490 kb on + strandat 1930.490 kb on + strandat 1930.490 kb on + strandat 1930.490 kb on + strandat 1930.490 kb on + strandat 1930.494 kb on + strandat 1930.494 kb on + strandat 1930.494 kb on + strandat 1930.494 kb on + strandat 1930.495 kb on - strandat 1930.495 kb on - strandat 1930.495 kb on - strandat 1930.495 kb on - strandat 1930.690 kb on + strandat 1930.690 kb on + strandat 1930.719 kb on + strandat 1930.720 kb on - strandat 1930.720 kb on - strandat 1930.725 kb on - strandat 1930.741 kb on - strandat 1930.784 kb on + strandat 1930.784 kb on + strandat 1930.784 kb on + strandat 1930.784 kb on + strandat 1930.784 kb on + strandat 1930.784 kb on + strandat 1930.785 kb on - strandat 1930.785 kb on - strandat 1930.785 kb on - strandat 1930.785 kb on - strandat 1930.786 kb on + strandat 1930.786 kb on + strandat 1930.802 kb on + strandat 1930.802 kb on + strandat 1930.802 kb on + strandat 1930.803 kb on - strandat 1930.803 kb on - strandat 1930.803 kb on - strandat 1930.810 kb on + strandat 1930.810 kb on + strandat 1930.829 kb on + strandat 1930.830 kb on - strandat 1930.830 kb on - strandat 1930.911 kb on + strandat 1930.911 kb on + strandat 1930.912 kb on - strandat 1931.016 kb on - strand, within OLJFJH_09320at 1931.155 kb on + strand, within OLJFJH_09320at 1931.156 kb on - strand, within OLJFJH_09320at 1931.156 kb on - strand, within OLJFJH_09320

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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1,928,486 - OLJFJH_09305 0.45 -2.4
1,928,486 - OLJFJH_09305 0.45 -1.0
1,928,486 - OLJFJH_09305 0.45 -3.3
1,928,501 - OLJFJH_09305 0.46 -0.2
1,928,510 + OLJFJH_09305 0.47 -0.8
1,928,510 + OLJFJH_09305 0.47 -0.1
1,928,510 + OLJFJH_09305 0.47 +0.3
1,928,510 + OLJFJH_09305 0.47 -1.5
1,928,510 + OLJFJH_09305 0.47 -0.7
1,928,511 - OLJFJH_09305 0.47 -2.2
1,928,511 - OLJFJH_09305 0.47 -2.4
1,928,511 - OLJFJH_09305 0.47 -3.2
1,928,551 + OLJFJH_09305 0.49 -1.7
1,928,637 - OLJFJH_09305 0.54 -2.5
1,928,721 - OLJFJH_09305 0.59 -1.9
1,928,728 + OLJFJH_09305 0.59 +0.1
1,928,941 + OLJFJH_09305 0.72 -1.1
1,929,124 + OLJFJH_09305 0.82 -1.7
1,929,124 + OLJFJH_09305 0.82 -0.5
1,929,124 + OLJFJH_09305 0.82 -0.5
1,929,125 - OLJFJH_09305 0.83 -3.5
1,929,245 - OLJFJH_09305 0.90 -1.6
1,929,433 + -2.3
1,929,433 + -2.2
1,929,433 + -2.3
1,929,434 - -0.5
1,929,434 - -2.2
1,929,515 - OLJFJH_09310 0.11 -0.8
1,929,515 - OLJFJH_09310 0.11 -1.9
1,929,515 - OLJFJH_09310 0.11 -2.1
1,929,585 + OLJFJH_09310 0.20 -1.6
1,929,585 + OLJFJH_09310 0.20 -1.8
1,929,585 + OLJFJH_09310 0.20 -2.2
1,929,586 - OLJFJH_09310 0.20 -1.4
1,929,704 - OLJFJH_09310 0.36 -1.6
1,929,738 + OLJFJH_09310 0.41 -2.0
1,929,738 + OLJFJH_09310 0.41 -3.1
1,929,738 + OLJFJH_09310 0.41 -1.4
1,929,738 + OLJFJH_09310 0.41 -1.8
1,929,810 + OLJFJH_09310 0.51 -1.6
1,930,013 + OLJFJH_09310 0.79 +0.2
1,930,093 + OLJFJH_09310 0.90 -1.6
1,930,094 - OLJFJH_09310 0.90 -1.5
1,930,166 + +0.4
1,930,167 - +0.2
1,930,274 + OLJFJH_09315 0.22 +0.2
1,930,409 + OLJFJH_09315 0.70 +0.5
1,930,472 + -0.2
1,930,472 + +1.1
1,930,472 + -0.4
1,930,473 - +0.1
1,930,481 - +0.5
1,930,481 - +0.1
1,930,490 + -0.7
1,930,490 + -1.7
1,930,490 + -0.7
1,930,490 + -2.1
1,930,490 + -0.6
1,930,490 + -0.2
1,930,490 + +0.3
1,930,494 + +0.4
1,930,494 + -0.9
1,930,494 + +0.0
1,930,494 + -0.5
1,930,495 - +0.6
1,930,495 - -1.3
1,930,495 - +0.9
1,930,495 - +1.1
1,930,690 + +1.0
1,930,690 + -0.2
1,930,719 + -1.6
1,930,720 - -1.6
1,930,720 - +0.2
1,930,725 - -0.5
1,930,741 - -1.1
1,930,784 + -0.2
1,930,784 + -1.8
1,930,784 + +0.4
1,930,784 + +1.4
1,930,784 + +0.4
1,930,784 + -0.3
1,930,785 - +0.2
1,930,785 - -0.2
1,930,785 - -0.6
1,930,785 - -0.4
1,930,786 + -0.4
1,930,786 + -0.6
1,930,802 + +0.5
1,930,802 + -0.4
1,930,802 + -0.5
1,930,803 - -0.9
1,930,803 - -1.0
1,930,803 - -1.3
1,930,810 + +0.1
1,930,810 + -1.2
1,930,829 + -0.7
1,930,830 - -0.1
1,930,830 - -0.9
1,930,911 + -0.4
1,930,911 + -1.0
1,930,912 - -0.2
1,931,016 - OLJFJH_09320 0.14 -0.9
1,931,155 + OLJFJH_09320 0.23 -2.2
1,931,156 - OLJFJH_09320 0.24 -1.1
1,931,156 - OLJFJH_09320 0.24 -0.2

Or see this region's nucleotide sequence