Strain Fitness in Erwinia amylovora T8 around OLJFJH_07820

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07810 and OLJFJH_07815 are separated by 109 nucleotidesOLJFJH_07815 and OLJFJH_07820 are separated by 177 nucleotidesOLJFJH_07820 and OLJFJH_07825 are separated by 244 nucleotidesOLJFJH_07825 and OLJFJH_07830 are separated by 5 nucleotides OLJFJH_07810: OLJFJH_07810 - aspartate aminotransferase family protein, at 1,614,364 to 1,615,836 _07810 OLJFJH_07815: OLJFJH_07815 - DedA family protein, at 1,615,946 to 1,616,602 _07815 OLJFJH_07820: OLJFJH_07820 - cystathionine beta-lyase, at 1,616,780 to 1,617,973 _07820 OLJFJH_07825: OLJFJH_07825 - tol-pal system-associated acyl-CoA thioesterase, at 1,618,218 to 1,618,958 _07825 OLJFJH_07830: OLJFJH_07830 - TonB system transport protein ExbD, at 1,618,964 to 1,619,386 _07830 Position (kb) 1616 1617 1618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1616.028 kb on - strand, within OLJFJH_07815at 1616.114 kb on + strand, within OLJFJH_07815at 1616.194 kb on + strand, within OLJFJH_07815at 1616.275 kb on - strand, within OLJFJH_07815at 1616.385 kb on - strand, within OLJFJH_07815at 1616.385 kb on - strand, within OLJFJH_07815at 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.594 kb on + strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.595 kb on - strandat 1616.617 kb on - strandat 1616.687 kb on - strandat 1616.755 kb on - strandat 1616.943 kb on + strand, within OLJFJH_07820at 1616.943 kb on + strand, within OLJFJH_07820at 1616.959 kb on - strand, within OLJFJH_07820at 1616.991 kb on + strand, within OLJFJH_07820at 1616.992 kb on - strand, within OLJFJH_07820at 1617.007 kb on + strand, within OLJFJH_07820at 1617.007 kb on + strand, within OLJFJH_07820at 1617.007 kb on + strand, within OLJFJH_07820at 1617.189 kb on - strand, within OLJFJH_07820at 1617.220 kb on + strand, within OLJFJH_07820at 1617.220 kb on + strand, within OLJFJH_07820at 1617.220 kb on + strand, within OLJFJH_07820at 1617.220 kb on + strand, within OLJFJH_07820at 1617.222 kb on + strand, within OLJFJH_07820at 1617.222 kb on + strand, within OLJFJH_07820at 1617.222 kb on + strand, within OLJFJH_07820at 1617.222 kb on + strand, within OLJFJH_07820at 1617.222 kb on + strand, within OLJFJH_07820at 1617.222 kb on + strand, within OLJFJH_07820at 1617.223 kb on - strand, within OLJFJH_07820at 1617.223 kb on - strand, within OLJFJH_07820at 1617.223 kb on - strand, within OLJFJH_07820at 1617.223 kb on - strand, within OLJFJH_07820at 1617.259 kb on - strand, within OLJFJH_07820at 1617.339 kb on + strand, within OLJFJH_07820at 1617.340 kb on - strand, within OLJFJH_07820at 1617.412 kb on + strand, within OLJFJH_07820at 1617.412 kb on + strand, within OLJFJH_07820at 1617.413 kb on - strand, within OLJFJH_07820at 1617.413 kb on - strand, within OLJFJH_07820at 1617.413 kb on - strand, within OLJFJH_07820at 1617.424 kb on + strand, within OLJFJH_07820at 1617.639 kb on + strand, within OLJFJH_07820at 1617.640 kb on - strand, within OLJFJH_07820at 1617.665 kb on - strand, within OLJFJH_07820at 1617.677 kb on + strand, within OLJFJH_07820at 1617.678 kb on - strand, within OLJFJH_07820at 1617.805 kb on - strand, within OLJFJH_07820at 1617.866 kb on + strandat 1617.867 kb on - strandat 1618.036 kb on + strandat 1618.048 kb on + strandat 1618.127 kb on + strandat 1618.198 kb on + strandat 1618.198 kb on + strandat 1618.264 kb on - strandat 1618.544 kb on + strand, within OLJFJH_07825at 1618.545 kb on - strand, within OLJFJH_07825at 1618.670 kb on - strand, within OLJFJH_07825at 1618.715 kb on + strand, within OLJFJH_07825at 1618.806 kb on + strand, within OLJFJH_07825at 1618.806 kb on + strand, within OLJFJH_07825at 1618.806 kb on + strand, within OLJFJH_07825at 1618.807 kb on - strand, within OLJFJH_07825at 1618.807 kb on - strand, within OLJFJH_07825at 1618.807 kb on - strand, within OLJFJH_07825at 1618.813 kb on + strand, within OLJFJH_07825at 1618.814 kb on - strand, within OLJFJH_07825at 1618.814 kb on - strand, within OLJFJH_07825at 1618.814 kb on - strand, within OLJFJH_07825at 1618.836 kb on + strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.837 kb on - strand, within OLJFJH_07825at 1618.880 kb on - strand, within OLJFJH_07825at 1618.951 kb on + strandat 1618.951 kb on + strandat 1618.951 kb on + strandat 1618.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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1,616,028 - OLJFJH_07815 0.12 -0.3
1,616,114 + OLJFJH_07815 0.26 -0.3
1,616,194 + OLJFJH_07815 0.38 -0.6
1,616,275 - OLJFJH_07815 0.50 -0.4
1,616,385 - OLJFJH_07815 0.67 -1.2
1,616,385 - OLJFJH_07815 0.67 -1.5
1,616,594 + -0.7
1,616,594 + +0.4
1,616,594 + -0.5
1,616,594 + -0.1
1,616,594 + -0.3
1,616,594 + -0.1
1,616,594 + +0.3
1,616,594 + -0.1
1,616,595 - -0.1
1,616,595 - -0.0
1,616,595 - -0.1
1,616,595 - -1.0
1,616,595 - +0.9
1,616,595 - -0.8
1,616,595 - +0.1
1,616,595 - +0.2
1,616,617 - +3.1
1,616,687 - -0.8
1,616,755 - +0.5
1,616,943 + OLJFJH_07820 0.14 -3.1
1,616,943 + OLJFJH_07820 0.14 -2.3
1,616,959 - OLJFJH_07820 0.15 -2.4
1,616,991 + OLJFJH_07820 0.18 -2.6
1,616,992 - OLJFJH_07820 0.18 -2.4
1,617,007 + OLJFJH_07820 0.19 -2.1
1,617,007 + OLJFJH_07820 0.19 -2.4
1,617,007 + OLJFJH_07820 0.19 -2.2
1,617,189 - OLJFJH_07820 0.34 -2.2
1,617,220 + OLJFJH_07820 0.37 -1.2
1,617,220 + OLJFJH_07820 0.37 -1.5
1,617,220 + OLJFJH_07820 0.37 -2.5
1,617,220 + OLJFJH_07820 0.37 -0.5
1,617,222 + OLJFJH_07820 0.37 -2.7
1,617,222 + OLJFJH_07820 0.37 -0.5
1,617,222 + OLJFJH_07820 0.37 -1.8
1,617,222 + OLJFJH_07820 0.37 -2.4
1,617,222 + OLJFJH_07820 0.37 -4.4
1,617,222 + OLJFJH_07820 0.37 -0.8
1,617,223 - OLJFJH_07820 0.37 -2.6
1,617,223 - OLJFJH_07820 0.37 -1.7
1,617,223 - OLJFJH_07820 0.37 -2.2
1,617,223 - OLJFJH_07820 0.37 -3.9
1,617,259 - OLJFJH_07820 0.40 -3.2
1,617,339 + OLJFJH_07820 0.47 -1.9
1,617,340 - OLJFJH_07820 0.47 -2.4
1,617,412 + OLJFJH_07820 0.53 -2.5
1,617,412 + OLJFJH_07820 0.53 -2.1
1,617,413 - OLJFJH_07820 0.53 -1.2
1,617,413 - OLJFJH_07820 0.53 -2.1
1,617,413 - OLJFJH_07820 0.53 -1.9
1,617,424 + OLJFJH_07820 0.54 -1.9
1,617,639 + OLJFJH_07820 0.72 -3.1
1,617,640 - OLJFJH_07820 0.72 -3.0
1,617,665 - OLJFJH_07820 0.74 -2.0
1,617,677 + OLJFJH_07820 0.75 -1.8
1,617,678 - OLJFJH_07820 0.75 -0.2
1,617,805 - OLJFJH_07820 0.86 -2.7
1,617,866 + -2.5
1,617,867 - -2.3
1,618,036 + -0.5
1,618,048 + -0.6
1,618,127 + +0.3
1,618,198 + +0.4
1,618,198 + +1.4
1,618,264 - +5.0
1,618,544 + OLJFJH_07825 0.44 -2.0
1,618,545 - OLJFJH_07825 0.44 -2.9
1,618,670 - OLJFJH_07825 0.61 +1.2
1,618,715 + OLJFJH_07825 0.67 -0.4
1,618,806 + OLJFJH_07825 0.79 -1.2
1,618,806 + OLJFJH_07825 0.79 -0.3
1,618,806 + OLJFJH_07825 0.79 -0.2
1,618,807 - OLJFJH_07825 0.79 -0.3
1,618,807 - OLJFJH_07825 0.79 -1.1
1,618,807 - OLJFJH_07825 0.79 +0.6
1,618,813 + OLJFJH_07825 0.80 -0.2
1,618,814 - OLJFJH_07825 0.80 -0.0
1,618,814 - OLJFJH_07825 0.80 +0.2
1,618,814 - OLJFJH_07825 0.80 -1.0
1,618,836 + OLJFJH_07825 0.83 -0.9
1,618,837 - OLJFJH_07825 0.84 -0.5
1,618,837 - OLJFJH_07825 0.84 -0.6
1,618,837 - OLJFJH_07825 0.84 +0.2
1,618,837 - OLJFJH_07825 0.84 -1.7
1,618,880 - OLJFJH_07825 0.89 -1.9
1,618,951 + -0.0
1,618,951 + -0.7
1,618,951 + +1.9
1,618,964 - +1.4

Or see this region's nucleotide sequence