Strain Fitness in Erwinia amylovora T8 around OLJFJH_06115

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06110 and OLJFJH_06115 are separated by 236 nucleotidesOLJFJH_06115 and OLJFJH_06120 are separated by 169 nucleotidesOLJFJH_06120 and OLJFJH_06125 are separated by 29 nucleotides OLJFJH_06110: OLJFJH_06110 - Phosphoenolpyruvate carboxylase, at 1,232,249 to 1,234,900 _06110 OLJFJH_06115: OLJFJH_06115 - acetylornithine deacetylase, at 1,235,137 to 1,236,288 _06115 OLJFJH_06120: OLJFJH_06120 - acetylglutamate kinase, at 1,236,458 to 1,237,237 _06120 OLJFJH_06125: OLJFJH_06125 - argininosuccinate synthase, at 1,237,267 to 1,238,481 _06125 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1234.165 kb on + strand, within OLJFJH_06110at 1234.325 kb on - strand, within OLJFJH_06110at 1234.395 kb on + strand, within OLJFJH_06110at 1234.396 kb on - strand, within OLJFJH_06110at 1234.638 kb on + strandat 1234.639 kb on - strandat 1234.862 kb on - strandat 1234.888 kb on - strandat 1234.901 kb on - strandat 1234.928 kb on + strandat 1234.929 kb on - strandat 1234.963 kb on - strandat 1234.963 kb on - strandat 1234.970 kb on + strandat 1234.971 kb on - strandat 1234.999 kb on - strandat 1235.005 kb on + strandat 1235.060 kb on + strandat 1235.083 kb on - strandat 1235.112 kb on + strandat 1235.138 kb on + strandat 1235.138 kb on + strandat 1235.138 kb on + strandat 1235.138 kb on + strandat 1235.138 kb on + strandat 1235.138 kb on + strandat 1235.139 kb on - strandat 1235.174 kb on - strandat 1235.174 kb on - strandat 1235.300 kb on + strand, within OLJFJH_06115at 1235.300 kb on + strand, within OLJFJH_06115at 1235.301 kb on - strand, within OLJFJH_06115at 1235.301 kb on - strand, within OLJFJH_06115at 1235.301 kb on - strand, within OLJFJH_06115at 1235.502 kb on + strand, within OLJFJH_06115at 1235.508 kb on + strand, within OLJFJH_06115at 1235.508 kb on + strand, within OLJFJH_06115at 1235.532 kb on + strand, within OLJFJH_06115at 1235.743 kb on - strand, within OLJFJH_06115at 1235.743 kb on - strand, within OLJFJH_06115at 1235.751 kb on + strand, within OLJFJH_06115at 1235.752 kb on - strand, within OLJFJH_06115at 1235.879 kb on + strand, within OLJFJH_06115at 1235.879 kb on + strand, within OLJFJH_06115at 1235.880 kb on - strand, within OLJFJH_06115at 1235.880 kb on - strand, within OLJFJH_06115at 1235.980 kb on - strand, within OLJFJH_06115at 1235.980 kb on - strand, within OLJFJH_06115at 1235.980 kb on - strand, within OLJFJH_06115at 1236.099 kb on + strand, within OLJFJH_06115at 1236.099 kb on + strand, within OLJFJH_06115at 1236.100 kb on - strand, within OLJFJH_06115at 1236.475 kb on + strandat 1236.475 kb on + strandat 1236.483 kb on + strandat 1236.484 kb on - strandat 1236.545 kb on + strand, within OLJFJH_06120at 1236.550 kb on + strand, within OLJFJH_06120at 1237.033 kb on + strand, within OLJFJH_06120at 1237.034 kb on - strand, within OLJFJH_06120at 1237.235 kb on + strandat 1237.240 kb on - strandat 1237.240 kb on - strandat 1237.240 kb on - strandat 1237.244 kb on + strandat 1237.244 kb on + strandat 1237.245 kb on - strandat 1237.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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1,234,165 + OLJFJH_06110 0.72 -0.7
1,234,325 - OLJFJH_06110 0.78 -0.1
1,234,395 + OLJFJH_06110 0.81 -0.3
1,234,396 - OLJFJH_06110 0.81 -0.8
1,234,638 + -0.4
1,234,639 - -0.4
1,234,862 - +1.5
1,234,888 - -1.0
1,234,901 - +0.5
1,234,928 + -0.4
1,234,929 - -0.8
1,234,963 - -0.1
1,234,963 - +1.5
1,234,970 + +0.5
1,234,971 - +0.5
1,234,999 - -0.1
1,235,005 + +0.1
1,235,060 + +0.2
1,235,083 - -0.3
1,235,112 + -1.4
1,235,138 + -1.1
1,235,138 + -0.1
1,235,138 + +0.0
1,235,138 + +1.0
1,235,138 + +1.5
1,235,138 + -0.5
1,235,139 - -0.1
1,235,174 - -2.9
1,235,174 - -4.3
1,235,300 + OLJFJH_06115 0.14 -6.6
1,235,300 + OLJFJH_06115 0.14 -4.4
1,235,301 - OLJFJH_06115 0.14 -4.0
1,235,301 - OLJFJH_06115 0.14 -4.4
1,235,301 - OLJFJH_06115 0.14 -1.1
1,235,502 + OLJFJH_06115 0.32 -1.8
1,235,508 + OLJFJH_06115 0.32 -2.5
1,235,508 + OLJFJH_06115 0.32 -4.2
1,235,532 + OLJFJH_06115 0.34 -0.4
1,235,743 - OLJFJH_06115 0.53 -2.8
1,235,743 - OLJFJH_06115 0.53 -2.4
1,235,751 + OLJFJH_06115 0.53 -0.7
1,235,752 - OLJFJH_06115 0.53 -4.4
1,235,879 + OLJFJH_06115 0.64 -5.0
1,235,879 + OLJFJH_06115 0.64 -1.3
1,235,880 - OLJFJH_06115 0.64 -6.0
1,235,880 - OLJFJH_06115 0.64 -3.3
1,235,980 - OLJFJH_06115 0.73 -2.6
1,235,980 - OLJFJH_06115 0.73 -5.5
1,235,980 - OLJFJH_06115 0.73 -4.6
1,236,099 + OLJFJH_06115 0.84 -5.3
1,236,099 + OLJFJH_06115 0.84 -7.1
1,236,100 - OLJFJH_06115 0.84 -0.9
1,236,475 + -2.0
1,236,475 + -4.1
1,236,483 + -4.0
1,236,484 - -2.9
1,236,545 + OLJFJH_06120 0.11 -4.5
1,236,550 + OLJFJH_06120 0.12 -4.9
1,237,033 + OLJFJH_06120 0.74 -5.5
1,237,034 - OLJFJH_06120 0.74 -5.7
1,237,235 + -0.1
1,237,240 - -4.9
1,237,240 - -4.4
1,237,240 - -6.0
1,237,244 + +0.6
1,237,244 + +0.2
1,237,245 - -3.6
1,237,245 - -4.0

Or see this region's nucleotide sequence