Strain Fitness in Erwinia amylovora T8 around OLJFJH_05915

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05900 and OLJFJH_05905 are separated by 38 nucleotidesOLJFJH_05905 and OLJFJH_05910 are separated by 82 nucleotidesOLJFJH_05910 and OLJFJH_05915 overlap by 1 nucleotidesOLJFJH_05915 and OLJFJH_05920 are separated by 62 nucleotidesOLJFJH_05920 and OLJFJH_05925 are separated by 98 nucleotides OLJFJH_05900: OLJFJH_05900 - rhodanese-like domain-containing protein, at 1,192,236 to 1,192,667 _05900 OLJFJH_05905: OLJFJH_05905 - glutaredoxin 3, at 1,192,706 to 1,192,957 _05905 OLJFJH_05910: OLJFJH_05910 - protein-export chaperone SecB, at 1,193,040 to 1,193,501 _05910 OLJFJH_05915: OLJFJH_05915 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,193,501 to 1,194,520 _05915 OLJFJH_05920: OLJFJH_05920 - serine O-acetyltransferase, at 1,194,583 to 1,195,401 _05920 OLJFJH_05925: OLJFJH_05925 - tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL, at 1,195,500 to 1,195,970 _05925 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1192.512 kb on - strand, within OLJFJH_05900at 1192.534 kb on + strand, within OLJFJH_05900at 1192.534 kb on + strand, within OLJFJH_05900at 1192.534 kb on + strand, within OLJFJH_05900at 1192.535 kb on - strand, within OLJFJH_05900at 1192.535 kb on - strand, within OLJFJH_05900at 1192.602 kb on + strand, within OLJFJH_05900at 1192.602 kb on + strand, within OLJFJH_05900at 1192.603 kb on - strand, within OLJFJH_05900at 1192.603 kb on - strand, within OLJFJH_05900at 1192.603 kb on - strand, within OLJFJH_05900at 1192.681 kb on + strandat 1192.683 kb on + strandat 1192.683 kb on + strandat 1192.683 kb on + strandat 1192.684 kb on - strandat 1192.791 kb on - strand, within OLJFJH_05905at 1192.858 kb on + strand, within OLJFJH_05905at 1193.027 kb on - strandat 1193.032 kb on + strandat 1193.032 kb on + strandat 1193.036 kb on + strandat 1193.036 kb on + strandat 1193.036 kb on + strandat 1193.036 kb on + strandat 1193.037 kb on - strandat 1193.085 kb on - strandat 1193.085 kb on - strandat 1193.085 kb on - strandat 1193.088 kb on + strand, within OLJFJH_05910at 1193.089 kb on - strand, within OLJFJH_05910at 1193.160 kb on - strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.205 kb on + strand, within OLJFJH_05910at 1193.206 kb on - strand, within OLJFJH_05910at 1193.206 kb on - strand, within OLJFJH_05910at 1193.206 kb on - strand, within OLJFJH_05910at 1193.381 kb on + strand, within OLJFJH_05910at 1193.402 kb on + strand, within OLJFJH_05910at 1193.450 kb on + strand, within OLJFJH_05910at 1193.451 kb on - strand, within OLJFJH_05910at 1193.457 kb on + strandat 1193.457 kb on + strandat 1193.457 kb on + strandat 1193.458 kb on - strandat 1193.458 kb on - strandat 1193.499 kb on + strandat 1193.500 kb on - strandat 1193.513 kb on + strandat 1193.514 kb on - strandat 1193.514 kb on - strandat 1193.631 kb on + strand, within OLJFJH_05915at 1193.631 kb on + strand, within OLJFJH_05915at 1193.631 kb on + strand, within OLJFJH_05915at 1193.632 kb on - strand, within OLJFJH_05915at 1193.683 kb on + strand, within OLJFJH_05915at 1193.684 kb on - strand, within OLJFJH_05915at 1193.760 kb on + strand, within OLJFJH_05915at 1193.760 kb on + strand, within OLJFJH_05915at 1193.760 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.772 kb on + strand, within OLJFJH_05915at 1193.773 kb on - strand, within OLJFJH_05915at 1193.773 kb on - strand, within OLJFJH_05915at 1193.773 kb on - strand, within OLJFJH_05915at 1193.828 kb on - strand, within OLJFJH_05915at 1194.000 kb on + strand, within OLJFJH_05915at 1194.000 kb on + strand, within OLJFJH_05915at 1194.009 kb on + strand, within OLJFJH_05915at 1194.039 kb on - strand, within OLJFJH_05915at 1194.246 kb on + strand, within OLJFJH_05915at 1194.246 kb on + strand, within OLJFJH_05915at 1194.278 kb on - strand, within OLJFJH_05915at 1194.378 kb on + strand, within OLJFJH_05915at 1194.378 kb on + strand, within OLJFJH_05915at 1194.398 kb on + strand, within OLJFJH_05915at 1194.474 kb on + strandat 1194.518 kb on + strandat 1194.670 kb on + strand, within OLJFJH_05920at 1194.718 kb on + strand, within OLJFJH_05920at 1194.718 kb on + strand, within OLJFJH_05920at 1194.718 kb on + strand, within OLJFJH_05920at 1194.719 kb on - strand, within OLJFJH_05920at 1194.719 kb on - strand, within OLJFJH_05920at 1194.719 kb on - strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.732 kb on + strand, within OLJFJH_05920at 1194.733 kb on - strand, within OLJFJH_05920at 1194.733 kb on - strand, within OLJFJH_05920at 1194.733 kb on - strand, within OLJFJH_05920at 1194.759 kb on + strand, within OLJFJH_05920at 1194.759 kb on + strand, within OLJFJH_05920at 1194.813 kb on + strand, within OLJFJH_05920at 1194.813 kb on + strand, within OLJFJH_05920at 1194.814 kb on - strand, within OLJFJH_05920at 1194.871 kb on + strand, within OLJFJH_05920at 1194.871 kb on + strand, within OLJFJH_05920at 1194.872 kb on - strand, within OLJFJH_05920at 1194.919 kb on + strand, within OLJFJH_05920at 1194.924 kb on + strand, within OLJFJH_05920at 1194.925 kb on - strand, within OLJFJH_05920at 1195.086 kb on + strand, within OLJFJH_05920at 1195.087 kb on - strand, within OLJFJH_05920at 1195.161 kb on + strand, within OLJFJH_05920at 1195.162 kb on - strand, within OLJFJH_05920at 1195.259 kb on + strand, within OLJFJH_05920at 1195.259 kb on + strand, within OLJFJH_05920at 1195.260 kb on - strand, within OLJFJH_05920at 1195.260 kb on - strand, within OLJFJH_05920at 1195.305 kb on + strand, within OLJFJH_05920at 1195.306 kb on - strand, within OLJFJH_05920at 1195.413 kb on - strandat 1195.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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1,192,512 - OLJFJH_05900 0.64 -1.2
1,192,534 + OLJFJH_05900 0.69 -1.2
1,192,534 + OLJFJH_05900 0.69 +1.2
1,192,534 + OLJFJH_05900 0.69 +0.1
1,192,535 - OLJFJH_05900 0.69 -1.1
1,192,535 - OLJFJH_05900 0.69 -2.1
1,192,602 + OLJFJH_05900 0.85 +0.5
1,192,602 + OLJFJH_05900 0.85 +0.5
1,192,603 - OLJFJH_05900 0.85 -1.1
1,192,603 - OLJFJH_05900 0.85 -2.0
1,192,603 - OLJFJH_05900 0.85 -0.0
1,192,681 + -0.5
1,192,683 + +0.5
1,192,683 + -0.1
1,192,683 + +1.3
1,192,684 - -0.2
1,192,791 - OLJFJH_05905 0.34 -1.2
1,192,858 + OLJFJH_05905 0.60 -0.3
1,193,027 - -0.8
1,193,032 + +0.3
1,193,032 + -0.3
1,193,036 + -0.1
1,193,036 + -0.7
1,193,036 + -0.7
1,193,036 + -0.8
1,193,037 - -1.8
1,193,085 - -2.1
1,193,085 - -2.5
1,193,085 - -0.7
1,193,088 + OLJFJH_05910 0.10 -1.2
1,193,089 - OLJFJH_05910 0.11 -0.3
1,193,160 - OLJFJH_05910 0.26 -0.3
1,193,205 + OLJFJH_05910 0.36 -1.1
1,193,205 + OLJFJH_05910 0.36 -1.0
1,193,205 + OLJFJH_05910 0.36 -0.8
1,193,205 + OLJFJH_05910 0.36 -1.7
1,193,205 + OLJFJH_05910 0.36 -1.8
1,193,205 + OLJFJH_05910 0.36 -1.2
1,193,205 + OLJFJH_05910 0.36 -0.5
1,193,205 + OLJFJH_05910 0.36 -0.9
1,193,206 - OLJFJH_05910 0.36 -1.0
1,193,206 - OLJFJH_05910 0.36 -1.8
1,193,206 - OLJFJH_05910 0.36 -1.0
1,193,381 + OLJFJH_05910 0.74 -1.0
1,193,402 + OLJFJH_05910 0.78 -1.2
1,193,450 + OLJFJH_05910 0.89 -0.8
1,193,451 - OLJFJH_05910 0.89 -1.2
1,193,457 + -1.0
1,193,457 + -0.5
1,193,457 + -0.1
1,193,458 - -1.8
1,193,458 - -1.1
1,193,499 + +0.9
1,193,500 - -0.7
1,193,513 + -0.7
1,193,514 - -1.1
1,193,514 - -1.7
1,193,631 + OLJFJH_05915 0.13 -1.1
1,193,631 + OLJFJH_05915 0.13 -1.4
1,193,631 + OLJFJH_05915 0.13 -1.2
1,193,632 - OLJFJH_05915 0.13 +0.1
1,193,683 + OLJFJH_05915 0.18 -1.1
1,193,684 - OLJFJH_05915 0.18 -1.2
1,193,760 + OLJFJH_05915 0.25 -1.2
1,193,760 + OLJFJH_05915 0.25 -1.5
1,193,760 + OLJFJH_05915 0.25 -1.2
1,193,772 + OLJFJH_05915 0.27 -0.5
1,193,772 + OLJFJH_05915 0.27 -1.1
1,193,772 + OLJFJH_05915 0.27 -1.0
1,193,772 + OLJFJH_05915 0.27 -1.4
1,193,772 + OLJFJH_05915 0.27 -1.7
1,193,772 + OLJFJH_05915 0.27 -1.5
1,193,772 + OLJFJH_05915 0.27 -2.5
1,193,772 + OLJFJH_05915 0.27 -2.0
1,193,772 + OLJFJH_05915 0.27 -0.8
1,193,773 - OLJFJH_05915 0.27 -1.1
1,193,773 - OLJFJH_05915 0.27 -1.0
1,193,773 - OLJFJH_05915 0.27 +0.3
1,193,828 - OLJFJH_05915 0.32 -1.7
1,194,000 + OLJFJH_05915 0.49 -0.5
1,194,000 + OLJFJH_05915 0.49 -1.2
1,194,009 + OLJFJH_05915 0.50 +0.6
1,194,039 - OLJFJH_05915 0.53 -0.3
1,194,246 + OLJFJH_05915 0.73 -0.2
1,194,246 + OLJFJH_05915 0.73 +0.1
1,194,278 - OLJFJH_05915 0.76 +0.7
1,194,378 + OLJFJH_05915 0.86 -0.1
1,194,378 + OLJFJH_05915 0.86 -0.6
1,194,398 + OLJFJH_05915 0.88 -1.1
1,194,474 + -1.7
1,194,518 + +0.5
1,194,670 + OLJFJH_05920 0.11 -1.0
1,194,718 + OLJFJH_05920 0.16 +0.3
1,194,718 + OLJFJH_05920 0.16 -1.7
1,194,718 + OLJFJH_05920 0.16 -1.2
1,194,719 - OLJFJH_05920 0.17 +1.3
1,194,719 - OLJFJH_05920 0.17 +3.2
1,194,719 - OLJFJH_05920 0.17 +1.2
1,194,732 + OLJFJH_05920 0.18 +0.3
1,194,732 + OLJFJH_05920 0.18 -0.4
1,194,732 + OLJFJH_05920 0.18 -0.1
1,194,732 + OLJFJH_05920 0.18 +0.3
1,194,733 - OLJFJH_05920 0.18 -1.8
1,194,733 - OLJFJH_05920 0.18 -1.1
1,194,733 - OLJFJH_05920 0.18 -1.0
1,194,759 + OLJFJH_05920 0.21 -0.7
1,194,759 + OLJFJH_05920 0.21 -0.8
1,194,813 + OLJFJH_05920 0.28 -1.0
1,194,813 + OLJFJH_05920 0.28 -0.5
1,194,814 - OLJFJH_05920 0.28 +1.5
1,194,871 + OLJFJH_05920 0.35 -0.5
1,194,871 + OLJFJH_05920 0.35 -1.3
1,194,872 - OLJFJH_05920 0.35 +0.3
1,194,919 + OLJFJH_05920 0.41 -0.3
1,194,924 + OLJFJH_05920 0.42 -1.1
1,194,925 - OLJFJH_05920 0.42 +0.9
1,195,086 + OLJFJH_05920 0.61 +1.3
1,195,087 - OLJFJH_05920 0.62 -0.7
1,195,161 + OLJFJH_05920 0.71 -0.1
1,195,162 - OLJFJH_05920 0.71 -0.7
1,195,259 + OLJFJH_05920 0.83 -2.1
1,195,259 + OLJFJH_05920 0.83 +0.9
1,195,260 - OLJFJH_05920 0.83 -0.7
1,195,260 - OLJFJH_05920 0.83 -1.6
1,195,305 + OLJFJH_05920 0.88 +1.1
1,195,306 - OLJFJH_05920 0.88 -1.1
1,195,413 - +0.8
1,195,413 - -0.1

Or see this region's nucleotide sequence