Strain Fitness in Erwinia amylovora T8 around OLJFJH_02470

Experiment: Matrix:pear;Phage:PBS;Temp:17;Samp:8-6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02460 and OLJFJH_02465 are separated by 65 nucleotidesOLJFJH_02465 and OLJFJH_02470 are separated by 77 nucleotidesOLJFJH_02470 and OLJFJH_02475 are separated by 466 nucleotides OLJFJH_02460: OLJFJH_02460 - biofilm peroxide resistance protein BsmA, at 440,296 to 440,664 _02460 OLJFJH_02465: OLJFJH_02465 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 440,730 to 441,467 _02465 OLJFJH_02470: OLJFJH_02470 - ribonuclease R, at 441,545 to 443,977 _02470 OLJFJH_02475: OLJFJH_02475 - adenylosuccinate synthase, at 444,444 to 445,781 _02475 Position (kb) 441 442 443 444Strain fitness (log2 ratio) -2 -1 0 1 2 3at 440.563 kb on + strand, within OLJFJH_02460at 440.564 kb on - strand, within OLJFJH_02460at 440.566 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.627 kb on + strand, within OLJFJH_02460at 440.628 kb on - strandat 440.628 kb on - strandat 440.628 kb on - strandat 440.629 kb on + strandat 440.630 kb on - strandat 440.630 kb on - strandat 440.630 kb on - strandat 440.675 kb on + strandat 440.675 kb on + strandat 440.675 kb on + strandat 440.679 kb on + strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.727 kb on + strandat 440.728 kb on - strandat 440.728 kb on - strandat 440.731 kb on + strandat 440.990 kb on + strand, within OLJFJH_02465at 440.991 kb on - strand, within OLJFJH_02465at 440.991 kb on - strand, within OLJFJH_02465at 441.132 kb on - strand, within OLJFJH_02465at 441.230 kb on - strand, within OLJFJH_02465at 441.258 kb on - strand, within OLJFJH_02465at 441.507 kb on - strandat 441.788 kb on - strandat 441.820 kb on + strand, within OLJFJH_02470at 441.820 kb on + strand, within OLJFJH_02470at 441.833 kb on - strand, within OLJFJH_02470at 441.959 kb on + strand, within OLJFJH_02470at 442.060 kb on + strand, within OLJFJH_02470at 442.060 kb on + strand, within OLJFJH_02470at 442.204 kb on + strand, within OLJFJH_02470at 442.204 kb on + strand, within OLJFJH_02470at 442.227 kb on + strand, within OLJFJH_02470at 442.227 kb on + strand, within OLJFJH_02470at 442.227 kb on + strand, within OLJFJH_02470at 442.227 kb on + strand, within OLJFJH_02470at 442.228 kb on - strand, within OLJFJH_02470at 442.228 kb on - strand, within OLJFJH_02470at 442.228 kb on - strand, within OLJFJH_02470at 442.247 kb on + strand, within OLJFJH_02470at 442.248 kb on - strand, within OLJFJH_02470at 442.279 kb on + strand, within OLJFJH_02470at 442.279 kb on + strand, within OLJFJH_02470at 442.280 kb on - strand, within OLJFJH_02470at 442.291 kb on - strand, within OLJFJH_02470at 442.670 kb on - strand, within OLJFJH_02470at 442.737 kb on + strand, within OLJFJH_02470at 442.737 kb on + strand, within OLJFJH_02470at 442.738 kb on - strand, within OLJFJH_02470at 442.738 kb on - strand, within OLJFJH_02470at 442.738 kb on - strand, within OLJFJH_02470at 442.779 kb on + strand, within OLJFJH_02470at 442.779 kb on + strand, within OLJFJH_02470at 442.780 kb on - strand, within OLJFJH_02470at 442.830 kb on + strand, within OLJFJH_02470at 442.830 kb on + strand, within OLJFJH_02470at 442.830 kb on + strand, within OLJFJH_02470at 442.830 kb on + strand, within OLJFJH_02470at 442.830 kb on + strand, within OLJFJH_02470at 442.831 kb on - strand, within OLJFJH_02470at 442.866 kb on + strand, within OLJFJH_02470at 442.873 kb on + strand, within OLJFJH_02470at 442.873 kb on + strand, within OLJFJH_02470at 443.064 kb on + strand, within OLJFJH_02470at 443.064 kb on + strand, within OLJFJH_02470at 443.064 kb on + strand, within OLJFJH_02470at 443.064 kb on + strand, within OLJFJH_02470at 443.065 kb on - strand, within OLJFJH_02470at 443.065 kb on - strand, within OLJFJH_02470at 443.065 kb on - strand, within OLJFJH_02470at 443.067 kb on + strand, within OLJFJH_02470at 443.068 kb on - strand, within OLJFJH_02470at 443.068 kb on - strand, within OLJFJH_02470at 443.416 kb on + strand, within OLJFJH_02470at 443.417 kb on - strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.451 kb on - strand, within OLJFJH_02470at 443.512 kb on - strand, within OLJFJH_02470at 443.534 kb on - strand, within OLJFJH_02470at 443.652 kb on + strand, within OLJFJH_02470at 443.716 kb on + strand, within OLJFJH_02470at 444.013 kb on + strandat 444.215 kb on - strandat 444.315 kb on - strandat 444.317 kb on + strandat 444.318 kb on - strandat 444.318 kb on - strandat 444.344 kb on + strandat 444.345 kb on - strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.347 kb on - strandat 444.347 kb on - strandat 444.347 kb on - strandat 444.350 kb on + strandat 444.350 kb on + strandat 444.351 kb on - strandat 444.351 kb on - strandat 444.407 kb on + strandat 444.407 kb on + strandat 444.408 kb on - strandat 444.445 kb on + strandat 444.445 kb on + strandat 444.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:17;Samp:8-6
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440,563 + OLJFJH_02460 0.72 -0.7
440,564 - OLJFJH_02460 0.73 +0.6
440,566 + OLJFJH_02460 0.73 -0.2
440,627 + OLJFJH_02460 0.90 +0.1
440,627 + OLJFJH_02460 0.90 -1.0
440,627 + OLJFJH_02460 0.90 -1.2
440,627 + OLJFJH_02460 0.90 -0.5
440,627 + OLJFJH_02460 0.90 +0.1
440,628 - +0.4
440,628 - +0.2
440,628 - -0.3
440,629 + +0.3
440,630 - -0.8
440,630 - -0.1
440,630 - -0.7
440,675 + -2.2
440,675 + -0.8
440,675 + +0.4
440,679 + +0.6
440,727 + +1.0
440,727 + -0.5
440,727 + +3.2
440,727 + -0.7
440,728 - +0.5
440,728 - -0.6
440,731 + +0.0
440,990 + OLJFJH_02465 0.35 -1.4
440,991 - OLJFJH_02465 0.35 -0.2
440,991 - OLJFJH_02465 0.35 -1.1
441,132 - OLJFJH_02465 0.54 -0.7
441,230 - OLJFJH_02465 0.68 -0.3
441,258 - OLJFJH_02465 0.72 -0.7
441,507 - +0.8
441,788 - -1.1
441,820 + OLJFJH_02470 0.11 -0.0
441,820 + OLJFJH_02470 0.11 -0.8
441,833 - OLJFJH_02470 0.12 -1.1
441,959 + OLJFJH_02470 0.17 -1.2
442,060 + OLJFJH_02470 0.21 -0.7
442,060 + OLJFJH_02470 0.21 -0.8
442,204 + OLJFJH_02470 0.27 -1.8
442,204 + OLJFJH_02470 0.27 -1.1
442,227 + OLJFJH_02470 0.28 +0.1
442,227 + OLJFJH_02470 0.28 -0.2
442,227 + OLJFJH_02470 0.28 -2.1
442,227 + OLJFJH_02470 0.28 -0.2
442,228 - OLJFJH_02470 0.28 -0.3
442,228 - OLJFJH_02470 0.28 -0.8
442,228 - OLJFJH_02470 0.28 -1.1
442,247 + OLJFJH_02470 0.29 -1.3
442,248 - OLJFJH_02470 0.29 -1.1
442,279 + OLJFJH_02470 0.30 -0.3
442,279 + OLJFJH_02470 0.30 -0.5
442,280 - OLJFJH_02470 0.30 -0.8
442,291 - OLJFJH_02470 0.31 -1.4
442,670 - OLJFJH_02470 0.46 -1.8
442,737 + OLJFJH_02470 0.49 +0.2
442,737 + OLJFJH_02470 0.49 -0.5
442,738 - OLJFJH_02470 0.49 -0.7
442,738 - OLJFJH_02470 0.49 -0.7
442,738 - OLJFJH_02470 0.49 -1.9
442,779 + OLJFJH_02470 0.51 -0.6
442,779 + OLJFJH_02470 0.51 -0.6
442,780 - OLJFJH_02470 0.51 -1.0
442,830 + OLJFJH_02470 0.53 -0.8
442,830 + OLJFJH_02470 0.53 -2.4
442,830 + OLJFJH_02470 0.53 -1.1
442,830 + OLJFJH_02470 0.53 -1.0
442,830 + OLJFJH_02470 0.53 -0.8
442,831 - OLJFJH_02470 0.53 -2.3
442,866 + OLJFJH_02470 0.54 -0.5
442,873 + OLJFJH_02470 0.55 -2.2
442,873 + OLJFJH_02470 0.55 -1.4
443,064 + OLJFJH_02470 0.62 +0.8
443,064 + OLJFJH_02470 0.62 -1.0
443,064 + OLJFJH_02470 0.62 -0.9
443,064 + OLJFJH_02470 0.62 -1.3
443,065 - OLJFJH_02470 0.62 -0.8
443,065 - OLJFJH_02470 0.62 -1.1
443,065 - OLJFJH_02470 0.62 +0.3
443,067 + OLJFJH_02470 0.63 +0.7
443,068 - OLJFJH_02470 0.63 -1.6
443,068 - OLJFJH_02470 0.63 -1.0
443,416 + OLJFJH_02470 0.77 -0.8
443,417 - OLJFJH_02470 0.77 -0.5
443,450 + OLJFJH_02470 0.78 -0.2
443,450 + OLJFJH_02470 0.78 -0.9
443,450 + OLJFJH_02470 0.78 -1.4
443,450 + OLJFJH_02470 0.78 +0.4
443,450 + OLJFJH_02470 0.78 -1.5
443,450 + OLJFJH_02470 0.78 -1.6
443,450 + OLJFJH_02470 0.78 +0.0
443,450 + OLJFJH_02470 0.78 -1.0
443,451 - OLJFJH_02470 0.78 -0.6
443,512 - OLJFJH_02470 0.81 -0.8
443,534 - OLJFJH_02470 0.82 -0.7
443,652 + OLJFJH_02470 0.87 -0.2
443,716 + OLJFJH_02470 0.89 -1.7
444,013 + +0.1
444,215 - +0.1
444,315 - +0.1
444,317 + +0.6
444,318 - -0.3
444,318 - -0.2
444,344 + -2.6
444,345 - +0.6
444,346 + +0.7
444,346 + +0.8
444,346 + -2.0
444,346 + -0.5
444,346 + +0.3
444,347 - -0.0
444,347 - -0.7
444,347 - -0.2
444,350 + -0.5
444,350 + +1.5
444,351 - +1.1
444,351 - -1.2
444,407 + -0.5
444,407 + -0.1
444,408 - -1.5
444,445 + -0.5
444,445 + -0.0
444,446 - -0.5

Or see this region's nucleotide sequence