Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS04445

Experiment: pectate 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS04440 and HMPREF1181_RS04445 are separated by 49 nucleotidesHMPREF1181_RS04445 and HMPREF1181_RS04450 are separated by 372 nucleotides HMPREF1181_RS04440: HMPREF1181_RS04440 - MFS transporter, at 124,154 to 125,464 _RS04440 HMPREF1181_RS04445: HMPREF1181_RS04445 - galactokinase, at 125,514 to 126,668 _RS04445 HMPREF1181_RS04450: HMPREF1181_RS04450 - transketolase, at 127,041 to 129,050 _RS04450 Position (kb) 125 126 127Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 124.638 kb on + strand, within HMPREF1181_RS04440at 124.639 kb on - strand, within HMPREF1181_RS04440at 124.688 kb on + strand, within HMPREF1181_RS04440at 124.845 kb on + strand, within HMPREF1181_RS04440at 124.852 kb on - strand, within HMPREF1181_RS04440at 124.852 kb on - strand, within HMPREF1181_RS04440at 124.914 kb on + strand, within HMPREF1181_RS04440at 124.915 kb on - strand, within HMPREF1181_RS04440at 124.915 kb on - strand, within HMPREF1181_RS04440at 125.067 kb on + strand, within HMPREF1181_RS04440at 125.180 kb on - strand, within HMPREF1181_RS04440at 125.206 kb on + strand, within HMPREF1181_RS04440at 125.443 kb on + strandat 125.468 kb on + strandat 125.468 kb on + strandat 125.468 kb on + strandat 125.469 kb on - strandat 125.476 kb on - strandat 125.478 kb on - strandat 125.481 kb on + strandat 125.511 kb on - strandat 125.521 kb on + strandat 125.521 kb on + strandat 125.522 kb on - strandat 125.527 kb on - strandat 125.530 kb on + strandat 125.530 kb on + strandat 125.577 kb on + strandat 125.577 kb on + strandat 125.577 kb on + strandat 125.578 kb on - strandat 125.597 kb on + strandat 125.702 kb on - strand, within HMPREF1181_RS04445at 125.709 kb on + strand, within HMPREF1181_RS04445at 125.730 kb on + strand, within HMPREF1181_RS04445at 125.735 kb on - strand, within HMPREF1181_RS04445at 125.746 kb on + strand, within HMPREF1181_RS04445at 125.785 kb on - strand, within HMPREF1181_RS04445at 125.785 kb on - strand, within HMPREF1181_RS04445at 125.824 kb on + strand, within HMPREF1181_RS04445at 125.830 kb on + strand, within HMPREF1181_RS04445at 125.831 kb on - strand, within HMPREF1181_RS04445at 125.831 kb on - strand, within HMPREF1181_RS04445at 125.910 kb on + strand, within HMPREF1181_RS04445at 125.911 kb on - strand, within HMPREF1181_RS04445at 125.911 kb on - strand, within HMPREF1181_RS04445at 125.997 kb on + strand, within HMPREF1181_RS04445at 125.997 kb on + strand, within HMPREF1181_RS04445at 125.998 kb on - strand, within HMPREF1181_RS04445at 126.021 kb on - strand, within HMPREF1181_RS04445at 126.096 kb on + strand, within HMPREF1181_RS04445at 126.096 kb on + strand, within HMPREF1181_RS04445at 126.097 kb on - strand, within HMPREF1181_RS04445at 126.309 kb on - strand, within HMPREF1181_RS04445at 126.309 kb on - strand, within HMPREF1181_RS04445at 126.392 kb on - strand, within HMPREF1181_RS04445at 126.434 kb on - strand, within HMPREF1181_RS04445at 126.436 kb on - strand, within HMPREF1181_RS04445at 126.442 kb on + strand, within HMPREF1181_RS04445at 126.534 kb on - strand, within HMPREF1181_RS04445at 126.564 kb on - strandat 126.564 kb on - strandat 126.612 kb on - strandat 126.627 kb on + strandat 126.627 kb on + strandat 126.628 kb on - strandat 126.638 kb on - strandat 126.638 kb on - strandat 126.661 kb on + strandat 126.801 kb on - strandat 126.805 kb on - strandat 126.835 kb on - strandat 126.881 kb on + strandat 126.881 kb on + strandat 126.909 kb on + strandat 126.909 kb on + strandat 126.939 kb on - strandat 126.976 kb on + strandat 127.028 kb on + strandat 127.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C)
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124,638 + HMPREF1181_RS04440 0.37 -1.4
124,639 - HMPREF1181_RS04440 0.37 -5.0
124,688 + HMPREF1181_RS04440 0.41 -2.0
124,845 + HMPREF1181_RS04440 0.53 -0.4
124,852 - HMPREF1181_RS04440 0.53 -3.2
124,852 - HMPREF1181_RS04440 0.53 -4.6
124,914 + HMPREF1181_RS04440 0.58 -1.6
124,915 - HMPREF1181_RS04440 0.58 -2.1
124,915 - HMPREF1181_RS04440 0.58 -1.2
125,067 + HMPREF1181_RS04440 0.70 -0.6
125,180 - HMPREF1181_RS04440 0.78 -3.8
125,206 + HMPREF1181_RS04440 0.80 -2.9
125,443 + -1.0
125,468 + -0.7
125,468 + -0.8
125,468 + -0.8
125,469 - -2.7
125,476 - -3.9
125,478 - -2.2
125,481 + -0.6
125,511 - -3.9
125,521 + -3.0
125,521 + -3.8
125,522 - -3.2
125,527 - -4.2
125,530 + -3.2
125,530 + -4.0
125,577 + -1.8
125,577 + +1.0
125,577 + -3.0
125,578 - -4.0
125,597 + -1.6
125,702 - HMPREF1181_RS04445 0.16 -3.2
125,709 + HMPREF1181_RS04445 0.17 -3.5
125,730 + HMPREF1181_RS04445 0.19 -2.6
125,735 - HMPREF1181_RS04445 0.19 -3.3
125,746 + HMPREF1181_RS04445 0.20 -1.9
125,785 - HMPREF1181_RS04445 0.23 -3.8
125,785 - HMPREF1181_RS04445 0.23 -4.0
125,824 + HMPREF1181_RS04445 0.27 -2.8
125,830 + HMPREF1181_RS04445 0.27 -2.1
125,831 - HMPREF1181_RS04445 0.27 -3.3
125,831 - HMPREF1181_RS04445 0.27 -3.9
125,910 + HMPREF1181_RS04445 0.34 -1.3
125,911 - HMPREF1181_RS04445 0.34 -1.0
125,911 - HMPREF1181_RS04445 0.34 -0.6
125,997 + HMPREF1181_RS04445 0.42 -4.3
125,997 + HMPREF1181_RS04445 0.42 -4.1
125,998 - HMPREF1181_RS04445 0.42 -1.4
126,021 - HMPREF1181_RS04445 0.44 -3.9
126,096 + HMPREF1181_RS04445 0.50 -2.6
126,096 + HMPREF1181_RS04445 0.50 -3.1
126,097 - HMPREF1181_RS04445 0.50 -3.4
126,309 - HMPREF1181_RS04445 0.69 -2.6
126,309 - HMPREF1181_RS04445 0.69 -2.7
126,392 - HMPREF1181_RS04445 0.76 -3.4
126,434 - HMPREF1181_RS04445 0.80 -2.7
126,436 - HMPREF1181_RS04445 0.80 -4.6
126,442 + HMPREF1181_RS04445 0.80 -1.2
126,534 - HMPREF1181_RS04445 0.88 -3.3
126,564 - -2.6
126,564 - -4.4
126,612 - -1.6
126,627 + -2.4
126,627 + -3.3
126,628 - -6.3
126,638 - -5.6
126,638 - -2.6
126,661 + -0.5
126,801 - -1.1
126,805 - +0.0
126,835 - +0.5
126,881 + -0.1
126,881 + -2.6
126,909 + +0.3
126,909 + -0.4
126,939 - -1.3
126,976 + -0.1
127,028 + +0.1
127,040 + -0.2

Or see this region's nucleotide sequence