Experiment: pectate 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02480 and HMPREF1181_RS02485 are separated by 9 nucleotides HMPREF1181_RS02485 and HMPREF1181_RS02490 are separated by 55 nucleotides HMPREF1181_RS02490 and HMPREF1181_RS02495 are separated by 144 nucleotides
HMPREF1181_RS02480: HMPREF1181_RS02480 - glycosyltransferase, at 620,189 to 621,208
_RS02480
HMPREF1181_RS02485: HMPREF1181_RS02485 - glycosyltransferase family 8 protein, at 621,218 to 622,138
_RS02485
HMPREF1181_RS02490: HMPREF1181_RS02490 - glycosyltransferase family 2 protein, at 622,194 to 622,841
_RS02490
HMPREF1181_RS02495: HMPREF1181_RS02495 - transposase, at 622,986 to 624,344
_RS02495
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 620.258 kb on + strand at 620.259 kb on - strand at 620.259 kb on - strand at 620.338 kb on + strand, within HMPREF1181_RS02480 at 620.345 kb on + strand, within HMPREF1181_RS02480 at 620.346 kb on - strand, within HMPREF1181_RS02480 at 620.367 kb on - strand, within HMPREF1181_RS02480 at 620.370 kb on - strand, within HMPREF1181_RS02480 at 620.371 kb on + strand, within HMPREF1181_RS02480 at 620.374 kb on + strand, within HMPREF1181_RS02480 at 620.374 kb on + strand, within HMPREF1181_RS02480 at 620.422 kb on + strand, within HMPREF1181_RS02480 at 620.422 kb on + strand, within HMPREF1181_RS02480 at 620.423 kb on - strand, within HMPREF1181_RS02480 at 620.428 kb on + strand, within HMPREF1181_RS02480 at 620.428 kb on + strand, within HMPREF1181_RS02480 at 620.432 kb on + strand, within HMPREF1181_RS02480 at 620.435 kb on + strand, within HMPREF1181_RS02480 at 620.435 kb on + strand, within HMPREF1181_RS02480 at 620.436 kb on - strand, within HMPREF1181_RS02480 at 620.454 kb on + strand, within HMPREF1181_RS02480 at 620.490 kb on - strand, within HMPREF1181_RS02480 at 620.547 kb on - strand, within HMPREF1181_RS02480 at 620.562 kb on + strand, within HMPREF1181_RS02480 at 620.562 kb on + strand, within HMPREF1181_RS02480 at 620.563 kb on - strand, within HMPREF1181_RS02480 at 620.565 kb on - strand, within HMPREF1181_RS02480 at 620.625 kb on - strand, within HMPREF1181_RS02480 at 620.638 kb on + strand, within HMPREF1181_RS02480 at 620.662 kb on + strand, within HMPREF1181_RS02480 at 620.711 kb on - strand, within HMPREF1181_RS02480 at 620.868 kb on - strand, within HMPREF1181_RS02480 at 620.876 kb on - strand, within HMPREF1181_RS02480 at 620.893 kb on + strand, within HMPREF1181_RS02480 at 621.009 kb on - strand, within HMPREF1181_RS02480 at 621.009 kb on - strand, within HMPREF1181_RS02480 at 621.012 kb on + strand, within HMPREF1181_RS02480 at 621.013 kb on - strand, within HMPREF1181_RS02480 at 621.051 kb on + strand, within HMPREF1181_RS02480 at 621.057 kb on - strand, within HMPREF1181_RS02480 at 621.110 kb on + strand at 621.110 kb on + strand at 621.162 kb on + strand at 621.207 kb on - strand at 621.226 kb on + strand at 621.227 kb on - strand at 621.227 kb on - strand at 621.238 kb on + strand at 621.295 kb on + strand at 621.322 kb on + strand, within HMPREF1181_RS02485 at 621.323 kb on - strand, within HMPREF1181_RS02485 at 621.327 kb on + strand, within HMPREF1181_RS02485 at 621.327 kb on + strand, within HMPREF1181_RS02485 at 621.328 kb on - strand, within HMPREF1181_RS02485 at 621.363 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.404 kb on + strand, within HMPREF1181_RS02485 at 621.405 kb on - strand, within HMPREF1181_RS02485 at 621.477 kb on - strand, within HMPREF1181_RS02485 at 621.477 kb on - strand, within HMPREF1181_RS02485 at 621.525 kb on + strand, within HMPREF1181_RS02485 at 621.526 kb on - strand, within HMPREF1181_RS02485 at 621.526 kb on - strand, within HMPREF1181_RS02485 at 621.530 kb on + strand, within HMPREF1181_RS02485 at 621.530 kb on + strand, within HMPREF1181_RS02485 at 621.531 kb on - strand, within HMPREF1181_RS02485 at 621.550 kb on - strand, within HMPREF1181_RS02485 at 621.550 kb on - strand, within HMPREF1181_RS02485 at 621.552 kb on + strand, within HMPREF1181_RS02485 at 621.563 kb on - strand, within HMPREF1181_RS02485 at 621.660 kb on - strand, within HMPREF1181_RS02485 at 621.660 kb on - strand, within HMPREF1181_RS02485 at 621.664 kb on + strand, within HMPREF1181_RS02485 at 621.665 kb on - strand, within HMPREF1181_RS02485 at 621.728 kb on - strand, within HMPREF1181_RS02485 at 621.728 kb on - strand, within HMPREF1181_RS02485 at 621.765 kb on - strand, within HMPREF1181_RS02485 at 621.784 kb on + strand, within HMPREF1181_RS02485 at 621.944 kb on + strand, within HMPREF1181_RS02485 at 621.944 kb on + strand, within HMPREF1181_RS02485 at 621.945 kb on - strand, within HMPREF1181_RS02485 at 621.947 kb on - strand, within HMPREF1181_RS02485 at 621.969 kb on - strand, within HMPREF1181_RS02485 at 621.976 kb on + strand, within HMPREF1181_RS02485 at 621.977 kb on - strand, within HMPREF1181_RS02485 at 622.002 kb on - strand, within HMPREF1181_RS02485 at 622.003 kb on + strand, within HMPREF1181_RS02485 at 622.004 kb on - strand, within HMPREF1181_RS02485 at 622.016 kb on - strand, within HMPREF1181_RS02485 at 622.078 kb on + strand at 622.078 kb on + strand at 622.078 kb on + strand at 622.078 kb on + strand at 622.118 kb on + strand at 622.208 kb on + strand at 622.209 kb on - strand at 622.216 kb on + strand at 622.249 kb on + strand at 622.256 kb on - strand at 622.470 kb on - strand, within HMPREF1181_RS02490 at 622.526 kb on + strand, within HMPREF1181_RS02490 at 622.526 kb on + strand, within HMPREF1181_RS02490 at 622.527 kb on - strand, within HMPREF1181_RS02490 at 622.527 kb on - strand, within HMPREF1181_RS02490 at 622.595 kb on + strand, within HMPREF1181_RS02490 at 622.619 kb on - strand, within HMPREF1181_RS02490 at 622.671 kb on + strand, within HMPREF1181_RS02490 at 622.672 kb on - strand, within HMPREF1181_RS02490 at 622.672 kb on - strand, within HMPREF1181_RS02490 at 622.782 kb on + strand at 622.784 kb on + strand at 622.784 kb on + strand at 622.785 kb on - strand at 622.785 kb on - strand at 622.790 kb on + strand at 622.791 kb on - strand at 622.792 kb on + strand at 622.793 kb on - strand at 622.820 kb on - strand at 622.853 kb on - strand at 622.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C) remove 620,258 + -1.7 620,259 - +0.1 620,259 - +0.5 620,338 + HMPREF1181_RS02480 0.15 -1.2 620,345 + HMPREF1181_RS02480 0.15 -0.4 620,346 - HMPREF1181_RS02480 0.15 +0.1 620,367 - HMPREF1181_RS02480 0.17 +1.2 620,370 - HMPREF1181_RS02480 0.18 +0.0 620,371 + HMPREF1181_RS02480 0.18 -0.1 620,374 + HMPREF1181_RS02480 0.18 -0.9 620,374 + HMPREF1181_RS02480 0.18 -0.3 620,422 + HMPREF1181_RS02480 0.23 -0.1 620,422 + HMPREF1181_RS02480 0.23 +0.5 620,423 - HMPREF1181_RS02480 0.23 -0.2 620,428 + HMPREF1181_RS02480 0.23 +0.1 620,428 + HMPREF1181_RS02480 0.23 -0.5 620,432 + HMPREF1181_RS02480 0.24 -0.7 620,435 + HMPREF1181_RS02480 0.24 -0.7 620,435 + HMPREF1181_RS02480 0.24 -0.1 620,436 - HMPREF1181_RS02480 0.24 -0.9 620,454 + HMPREF1181_RS02480 0.26 -0.1 620,490 - HMPREF1181_RS02480 0.30 -0.2 620,547 - HMPREF1181_RS02480 0.35 -0.3 620,562 + HMPREF1181_RS02480 0.37 -0.2 620,562 + HMPREF1181_RS02480 0.37 -0.4 620,563 - HMPREF1181_RS02480 0.37 -0.1 620,565 - HMPREF1181_RS02480 0.37 -0.1 620,625 - HMPREF1181_RS02480 0.43 +0.1 620,638 + HMPREF1181_RS02480 0.44 -0.8 620,662 + HMPREF1181_RS02480 0.46 -0.7 620,711 - HMPREF1181_RS02480 0.51 -0.2 620,868 - HMPREF1181_RS02480 0.67 -0.6 620,876 - HMPREF1181_RS02480 0.67 +0.2 620,893 + HMPREF1181_RS02480 0.69 -0.4 621,009 - HMPREF1181_RS02480 0.80 -1.3 621,009 - HMPREF1181_RS02480 0.80 +0.1 621,012 + HMPREF1181_RS02480 0.81 -1.0 621,013 - HMPREF1181_RS02480 0.81 -1.0 621,051 + HMPREF1181_RS02480 0.85 -0.4 621,057 - HMPREF1181_RS02480 0.85 +0.3 621,110 + -0.1 621,110 + -2.1 621,162 + -0.6 621,207 - -0.2 621,226 + +0.1 621,227 - -0.7 621,227 - -0.4 621,238 + -0.4 621,295 + +0.0 621,322 + HMPREF1181_RS02485 0.11 +0.0 621,323 - HMPREF1181_RS02485 0.11 -0.4 621,327 + HMPREF1181_RS02485 0.12 -0.6 621,327 + HMPREF1181_RS02485 0.12 -0.2 621,328 - HMPREF1181_RS02485 0.12 -1.2 621,363 + HMPREF1181_RS02485 0.16 -0.2 621,404 + HMPREF1181_RS02485 0.20 -0.1 621,404 + HMPREF1181_RS02485 0.20 +0.2 621,404 + HMPREF1181_RS02485 0.20 -0.2 621,405 - HMPREF1181_RS02485 0.20 -0.2 621,477 - HMPREF1181_RS02485 0.28 +0.2 621,477 - HMPREF1181_RS02485 0.28 +0.1 621,525 + HMPREF1181_RS02485 0.33 -2.9 621,526 - HMPREF1181_RS02485 0.33 -0.6 621,526 - HMPREF1181_RS02485 0.33 +0.6 621,530 + HMPREF1181_RS02485 0.34 -0.6 621,530 + HMPREF1181_RS02485 0.34 +0.1 621,531 - HMPREF1181_RS02485 0.34 -0.9 621,550 - HMPREF1181_RS02485 0.36 +0.1 621,550 - HMPREF1181_RS02485 0.36 -0.3 621,552 + HMPREF1181_RS02485 0.36 -0.6 621,563 - HMPREF1181_RS02485 0.37 -0.5 621,660 - HMPREF1181_RS02485 0.48 -1.5 621,660 - HMPREF1181_RS02485 0.48 +0.0 621,664 + HMPREF1181_RS02485 0.48 -0.2 621,665 - HMPREF1181_RS02485 0.49 -0.6 621,728 - HMPREF1181_RS02485 0.55 -0.2 621,728 - HMPREF1181_RS02485 0.55 -1.0 621,765 - HMPREF1181_RS02485 0.59 -0.3 621,784 + HMPREF1181_RS02485 0.61 -0.1 621,944 + HMPREF1181_RS02485 0.79 +0.2 621,944 + HMPREF1181_RS02485 0.79 -0.5 621,945 - HMPREF1181_RS02485 0.79 -1.1 621,947 - HMPREF1181_RS02485 0.79 +1.1 621,969 - HMPREF1181_RS02485 0.82 +0.4 621,976 + HMPREF1181_RS02485 0.82 -0.2 621,977 - HMPREF1181_RS02485 0.82 -0.7 622,002 - HMPREF1181_RS02485 0.85 +0.1 622,003 + HMPREF1181_RS02485 0.85 -0.9 622,004 - HMPREF1181_RS02485 0.85 -0.8 622,016 - HMPREF1181_RS02485 0.87 +0.2 622,078 + -1.1 622,078 + -0.3 622,078 + -0.5 622,078 + +0.3 622,118 + +0.6 622,208 + -0.1 622,209 - -0.4 622,216 + -0.3 622,249 + +0.7 622,256 - -0.4 622,470 - HMPREF1181_RS02490 0.43 -0.1 622,526 + HMPREF1181_RS02490 0.51 +0.1 622,526 + HMPREF1181_RS02490 0.51 +0.4 622,527 - HMPREF1181_RS02490 0.51 -0.6 622,527 - HMPREF1181_RS02490 0.51 -0.6 622,595 + HMPREF1181_RS02490 0.62 +0.6 622,619 - HMPREF1181_RS02490 0.66 -0.2 622,671 + HMPREF1181_RS02490 0.74 +0.7 622,672 - HMPREF1181_RS02490 0.74 -0.3 622,672 - HMPREF1181_RS02490 0.74 -2.1 622,782 + +0.1 622,784 + -0.4 622,784 + -0.0 622,785 - -0.1 622,785 - -0.1 622,790 + -0.5 622,791 - -0.7 622,792 + -0.5 622,793 - +0.3 622,820 - +0.1 622,853 - -0.7 622,853 - -2.4
Or see this region's nucleotide sequence