Experiment: pectate 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02440 and HMPREF1181_RS02445 are separated by 112 nucleotides HMPREF1181_RS02445 and HMPREF1181_RS02450 are separated by 99 nucleotides HMPREF1181_RS02450 and HMPREF1181_RS02455 are separated by 19 nucleotides HMPREF1181_RS02455 and HMPREF1181_RS02460 are separated by 7 nucleotides
HMPREF1181_RS02440: HMPREF1181_RS02440 - 4-phosphoerythronate dehydrogenase PdxB, at 613,199 to 614,248
_RS02440
HMPREF1181_RS02445: HMPREF1181_RS02445 - ORF6N domain-containing protein, at 614,361 to 614,909
_RS02445
HMPREF1181_RS02450: HMPREF1181_RS02450 - hypothetical protein, at 615,009 to 615,725
_RS02450
HMPREF1181_RS02455: HMPREF1181_RS02455 - hypothetical protein, at 615,745 to 616,497
_RS02455
HMPREF1181_RS02460: HMPREF1181_RS02460 - glycosyltransferase family 2 protein, at 616,505 to 617,404
_RS02460
Position (kb) 615
616 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 614.311 kb on + strand at 614.314 kb on + strand at 614.315 kb on - strand at 614.347 kb on - strand at 614.357 kb on - strand at 614.357 kb on - strand at 614.389 kb on + strand at 614.406 kb on - strand at 614.455 kb on - strand, within HMPREF1181_RS02445 at 614.521 kb on - strand, within HMPREF1181_RS02445 at 614.523 kb on - strand, within HMPREF1181_RS02445 at 614.631 kb on + strand, within HMPREF1181_RS02445 at 614.634 kb on - strand, within HMPREF1181_RS02445 at 614.813 kb on + strand, within HMPREF1181_RS02445 at 614.872 kb on + strand at 614.873 kb on - strand at 614.907 kb on + strand at 614.993 kb on + strand at 614.997 kb on + strand at 615.559 kb on + strand, within HMPREF1181_RS02450 at 615.559 kb on + strand, within HMPREF1181_RS02450 at 615.668 kb on + strand at 615.684 kb on + strand at 615.728 kb on + strand at 616.511 kb on - strand at 616.511 kb on - strand at 616.515 kb on + strand at 616.521 kb on + strand at 616.521 kb on + strand at 616.522 kb on - strand at 616.532 kb on + strand at 616.532 kb on + strand at 616.533 kb on - strand at 616.542 kb on + strand at 616.603 kb on - strand, within HMPREF1181_RS02460 at 616.707 kb on - strand, within HMPREF1181_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction pectate 2.5 mg/mL (C) remove 614,311 + +0.3 614,314 + -1.0 614,315 - +0.3 614,347 - -1.1 614,357 - +0.9 614,357 - -0.3 614,389 + +0.4 614,406 - +0.4 614,455 - HMPREF1181_RS02445 0.17 +0.1 614,521 - HMPREF1181_RS02445 0.29 +0.9 614,523 - HMPREF1181_RS02445 0.30 +0.2 614,631 + HMPREF1181_RS02445 0.49 -1.0 614,634 - HMPREF1181_RS02445 0.50 -0.7 614,813 + HMPREF1181_RS02445 0.82 +0.3 614,872 + +0.2 614,873 - -0.4 614,907 + +0.8 614,993 + -0.1 614,997 + -0.1 615,559 + HMPREF1181_RS02450 0.77 -4.5 615,559 + HMPREF1181_RS02450 0.77 -2.7 615,668 + -3.5 615,684 + -2.4 615,728 + -1.5 616,511 - -3.8 616,511 - -2.8 616,515 + -2.8 616,521 + -1.3 616,521 + -2.0 616,522 - -2.5 616,532 + -3.1 616,532 + -3.7 616,533 - -0.9 616,542 + -1.9 616,603 - HMPREF1181_RS02460 0.11 -1.5 616,707 - HMPREF1181_RS02460 0.22 -1.5
Or see this region's nucleotide sequence