Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS15280

Experiment: Locust bean gum 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1181_RS15275 and HMPREF1181_RS15280 are separated by 26 nucleotidesHMPREF1181_RS15280 and HMPREF1181_RS15285 are separated by 98 nucleotides HMPREF1181_RS15275: HMPREF1181_RS15275 - hypothetical protein, at 259,064 to 260,638 _RS15275 HMPREF1181_RS15280: HMPREF1181_RS15280 - DUF3868 domain-containing protein, at 260,665 to 262,101 _RS15280 HMPREF1181_RS15285: HMPREF1181_RS15285 - sugar MFS transporter, at 262,200 to 263,414 _RS15285 Position (kb) 260 261 262 263Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 259.680 kb on + strand, within HMPREF1181_RS15275at 259.796 kb on + strand, within HMPREF1181_RS15275at 259.796 kb on + strand, within HMPREF1181_RS15275at 259.797 kb on - strand, within HMPREF1181_RS15275at 259.863 kb on - strand, within HMPREF1181_RS15275at 259.863 kb on - strand, within HMPREF1181_RS15275at 259.901 kb on - strand, within HMPREF1181_RS15275at 260.176 kb on - strand, within HMPREF1181_RS15275at 260.284 kb on + strand, within HMPREF1181_RS15275at 260.285 kb on - strand, within HMPREF1181_RS15275at 260.285 kb on - strand, within HMPREF1181_RS15275at 260.418 kb on - strand, within HMPREF1181_RS15275at 260.605 kb on + strandat 260.606 kb on - strandat 260.677 kb on + strandat 260.678 kb on - strandat 260.802 kb on - strandat 260.844 kb on - strand, within HMPREF1181_RS15280at 260.844 kb on - strand, within HMPREF1181_RS15280at 260.886 kb on - strand, within HMPREF1181_RS15280at 260.886 kb on - strand, within HMPREF1181_RS15280at 260.948 kb on - strand, within HMPREF1181_RS15280at 260.948 kb on - strand, within HMPREF1181_RS15280at 260.959 kb on + strand, within HMPREF1181_RS15280at 260.959 kb on + strand, within HMPREF1181_RS15280at 260.962 kb on - strand, within HMPREF1181_RS15280at 260.962 kb on - strand, within HMPREF1181_RS15280at 260.962 kb on - strand, within HMPREF1181_RS15280at 260.967 kb on + strand, within HMPREF1181_RS15280at 261.010 kb on - strand, within HMPREF1181_RS15280at 261.014 kb on + strand, within HMPREF1181_RS15280at 261.052 kb on - strand, within HMPREF1181_RS15280at 261.096 kb on - strand, within HMPREF1181_RS15280at 261.251 kb on + strand, within HMPREF1181_RS15280at 261.251 kb on + strand, within HMPREF1181_RS15280at 261.251 kb on + strand, within HMPREF1181_RS15280at 261.251 kb on + strand, within HMPREF1181_RS15280at 261.251 kb on + strand, within HMPREF1181_RS15280at 261.252 kb on - strand, within HMPREF1181_RS15280at 261.252 kb on - strand, within HMPREF1181_RS15280at 261.256 kb on + strand, within HMPREF1181_RS15280at 261.256 kb on + strand, within HMPREF1181_RS15280at 261.257 kb on - strand, within HMPREF1181_RS15280at 261.263 kb on + strand, within HMPREF1181_RS15280at 261.380 kb on + strand, within HMPREF1181_RS15280at 261.461 kb on - strand, within HMPREF1181_RS15280at 261.495 kb on - strand, within HMPREF1181_RS15280at 261.503 kb on + strand, within HMPREF1181_RS15280at 261.598 kb on + strand, within HMPREF1181_RS15280at 261.676 kb on + strand, within HMPREF1181_RS15280at 261.703 kb on - strand, within HMPREF1181_RS15280at 261.760 kb on + strand, within HMPREF1181_RS15280at 261.760 kb on + strand, within HMPREF1181_RS15280at 261.763 kb on - strand, within HMPREF1181_RS15280at 261.796 kb on + strand, within HMPREF1181_RS15280at 261.797 kb on - strand, within HMPREF1181_RS15280at 261.848 kb on - strand, within HMPREF1181_RS15280at 261.879 kb on + strand, within HMPREF1181_RS15280at 261.879 kb on + strand, within HMPREF1181_RS15280at 261.892 kb on - strand, within HMPREF1181_RS15280at 261.919 kb on + strand, within HMPREF1181_RS15280at 261.951 kb on - strand, within HMPREF1181_RS15280at 261.951 kb on - strand, within HMPREF1181_RS15280at 261.951 kb on - strand, within HMPREF1181_RS15280at 262.099 kb on + strandat 262.100 kb on - strandat 262.104 kb on + strandat 262.105 kb on - strandat 262.174 kb on + strandat 262.177 kb on + strandat 262.178 kb on - strandat 262.180 kb on - strandat 262.187 kb on - strandat 262.202 kb on - strandat 262.202 kb on - strandat 262.249 kb on - strandat 262.258 kb on + strandat 262.299 kb on - strandat 262.333 kb on - strand, within HMPREF1181_RS15285at 262.421 kb on + strand, within HMPREF1181_RS15285at 262.430 kb on + strand, within HMPREF1181_RS15285at 262.430 kb on + strand, within HMPREF1181_RS15285at 262.430 kb on + strand, within HMPREF1181_RS15285at 262.431 kb on - strand, within HMPREF1181_RS15285at 262.434 kb on - strand, within HMPREF1181_RS15285at 262.434 kb on - strand, within HMPREF1181_RS15285at 262.555 kb on - strand, within HMPREF1181_RS15285at 262.666 kb on - strand, within HMPREF1181_RS15285at 262.670 kb on - strand, within HMPREF1181_RS15285at 262.764 kb on + strand, within HMPREF1181_RS15285at 262.818 kb on - strand, within HMPREF1181_RS15285at 262.818 kb on - strand, within HMPREF1181_RS15285at 262.818 kb on - strand, within HMPREF1181_RS15285at 262.840 kb on - strand, within HMPREF1181_RS15285at 262.866 kb on + strand, within HMPREF1181_RS15285at 262.866 kb on + strand, within HMPREF1181_RS15285at 262.866 kb on + strand, within HMPREF1181_RS15285at 262.867 kb on - strand, within HMPREF1181_RS15285at 262.870 kb on + strand, within HMPREF1181_RS15285at 262.871 kb on - strand, within HMPREF1181_RS15285at 262.871 kb on - strand, within HMPREF1181_RS15285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C)
remove
259,680 + HMPREF1181_RS15275 0.39 +0.6
259,796 + HMPREF1181_RS15275 0.46 +0.2
259,796 + HMPREF1181_RS15275 0.46 +0.1
259,797 - HMPREF1181_RS15275 0.47 +0.8
259,863 - HMPREF1181_RS15275 0.51 +0.8
259,863 - HMPREF1181_RS15275 0.51 +1.8
259,901 - HMPREF1181_RS15275 0.53 +0.4
260,176 - HMPREF1181_RS15275 0.71 +0.1
260,284 + HMPREF1181_RS15275 0.77 +1.5
260,285 - HMPREF1181_RS15275 0.78 -2.3
260,285 - HMPREF1181_RS15275 0.78 -0.5
260,418 - HMPREF1181_RS15275 0.86 +2.8
260,605 + -0.8
260,606 - +0.2
260,677 + -1.4
260,678 - +1.1
260,802 - +0.0
260,844 - HMPREF1181_RS15280 0.12 -2.0
260,844 - HMPREF1181_RS15280 0.12 +2.1
260,886 - HMPREF1181_RS15280 0.15 +0.4
260,886 - HMPREF1181_RS15280 0.15 -2.0
260,948 - HMPREF1181_RS15280 0.20 +2.2
260,948 - HMPREF1181_RS15280 0.20 -1.2
260,959 + HMPREF1181_RS15280 0.20 +1.0
260,959 + HMPREF1181_RS15280 0.20 +2.0
260,962 - HMPREF1181_RS15280 0.21 -2.3
260,962 - HMPREF1181_RS15280 0.21 +0.5
260,962 - HMPREF1181_RS15280 0.21 +0.9
260,967 + HMPREF1181_RS15280 0.21 -0.3
261,010 - HMPREF1181_RS15280 0.24 -2.6
261,014 + HMPREF1181_RS15280 0.24 -0.5
261,052 - HMPREF1181_RS15280 0.27 -2.4
261,096 - HMPREF1181_RS15280 0.30 +2.1
261,251 + HMPREF1181_RS15280 0.41 -0.8
261,251 + HMPREF1181_RS15280 0.41 +1.1
261,251 + HMPREF1181_RS15280 0.41 +0.6
261,251 + HMPREF1181_RS15280 0.41 -0.2
261,251 + HMPREF1181_RS15280 0.41 -4.1
261,252 - HMPREF1181_RS15280 0.41 +2.5
261,252 - HMPREF1181_RS15280 0.41 -0.3
261,256 + HMPREF1181_RS15280 0.41 -3.2
261,256 + HMPREF1181_RS15280 0.41 +0.8
261,257 - HMPREF1181_RS15280 0.41 +2.3
261,263 + HMPREF1181_RS15280 0.42 -2.4
261,380 + HMPREF1181_RS15280 0.50 +0.8
261,461 - HMPREF1181_RS15280 0.55 +0.5
261,495 - HMPREF1181_RS15280 0.58 +0.4
261,503 + HMPREF1181_RS15280 0.58 +0.3
261,598 + HMPREF1181_RS15280 0.65 -1.2
261,676 + HMPREF1181_RS15280 0.70 -1.6
261,703 - HMPREF1181_RS15280 0.72 -2.2
261,760 + HMPREF1181_RS15280 0.76 -0.3
261,760 + HMPREF1181_RS15280 0.76 +0.8
261,763 - HMPREF1181_RS15280 0.76 +0.7
261,796 + HMPREF1181_RS15280 0.79 +0.1
261,797 - HMPREF1181_RS15280 0.79 +1.5
261,848 - HMPREF1181_RS15280 0.82 +3.4
261,879 + HMPREF1181_RS15280 0.84 +1.4
261,879 + HMPREF1181_RS15280 0.84 -1.0
261,892 - HMPREF1181_RS15280 0.85 -4.5
261,919 + HMPREF1181_RS15280 0.87 +1.4
261,951 - HMPREF1181_RS15280 0.89 +0.4
261,951 - HMPREF1181_RS15280 0.89 -0.3
261,951 - HMPREF1181_RS15280 0.89 +0.2
262,099 + +0.8
262,100 - -1.7
262,104 + +2.4
262,105 - -1.7
262,174 + -0.7
262,177 + -1.2
262,178 - -1.0
262,180 - -4.9
262,187 - -1.4
262,202 - -0.9
262,202 - +0.7
262,249 - -1.3
262,258 + +0.3
262,299 - -3.6
262,333 - HMPREF1181_RS15285 0.11 +0.4
262,421 + HMPREF1181_RS15285 0.18 -0.0
262,430 + HMPREF1181_RS15285 0.19 +0.1
262,430 + HMPREF1181_RS15285 0.19 +1.3
262,430 + HMPREF1181_RS15285 0.19 +2.0
262,431 - HMPREF1181_RS15285 0.19 +1.3
262,434 - HMPREF1181_RS15285 0.19 -0.9
262,434 - HMPREF1181_RS15285 0.19 +1.8
262,555 - HMPREF1181_RS15285 0.29 +1.0
262,666 - HMPREF1181_RS15285 0.38 -1.9
262,670 - HMPREF1181_RS15285 0.39 +0.9
262,764 + HMPREF1181_RS15285 0.46 +3.1
262,818 - HMPREF1181_RS15285 0.51 +0.3
262,818 - HMPREF1181_RS15285 0.51 +0.9
262,818 - HMPREF1181_RS15285 0.51 +1.3
262,840 - HMPREF1181_RS15285 0.53 +1.8
262,866 + HMPREF1181_RS15285 0.55 +0.7
262,866 + HMPREF1181_RS15285 0.55 +1.8
262,866 + HMPREF1181_RS15285 0.55 +1.3
262,867 - HMPREF1181_RS15285 0.55 +2.0
262,870 + HMPREF1181_RS15285 0.55 -0.4
262,871 - HMPREF1181_RS15285 0.55 +1.2
262,871 - HMPREF1181_RS15285 0.55 +1.7

Or see this region's nucleotide sequence