Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS14040 and HMPREF1181_RS14045 are separated by 311 nucleotides HMPREF1181_RS14045 and HMPREF1181_RS14050 are separated by 169 nucleotides
HMPREF1181_RS14040: HMPREF1181_RS14040 - J domain-containing protein, at 328,748 to 329,725
_RS14040
HMPREF1181_RS14045: HMPREF1181_RS14045 - glycoside hydrolase family 9 protein, at 330,037 to 332,565
_RS14045
HMPREF1181_RS14050: HMPREF1181_RS14050 - low specificity L-threonine aldolase, at 332,735 to 333,757
_RS14050
Position (kb) 330
331
332
333 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 329.288 kb on - strand, within HMPREF1181_RS14040 at 329.367 kb on + strand, within HMPREF1181_RS14040 at 329.377 kb on + strand, within HMPREF1181_RS14040 at 329.378 kb on - strand, within HMPREF1181_RS14040 at 329.378 kb on - strand, within HMPREF1181_RS14040 at 329.529 kb on + strand, within HMPREF1181_RS14040 at 329.579 kb on - strand, within HMPREF1181_RS14040 at 329.603 kb on - strand, within HMPREF1181_RS14040 at 329.647 kb on + strand at 329.718 kb on + strand at 329.731 kb on - strand at 329.764 kb on + strand at 329.785 kb on - strand at 329.857 kb on + strand at 329.857 kb on + strand at 329.870 kb on - strand at 329.951 kb on + strand at 329.987 kb on - strand at 330.004 kb on - strand at 330.037 kb on - strand at 330.047 kb on - strand at 330.147 kb on + strand at 330.152 kb on + strand at 330.279 kb on + strand at 330.322 kb on + strand, within HMPREF1181_RS14045 at 330.322 kb on + strand, within HMPREF1181_RS14045 at 330.322 kb on + strand, within HMPREF1181_RS14045 at 330.377 kb on + strand, within HMPREF1181_RS14045 at 330.378 kb on - strand, within HMPREF1181_RS14045 at 330.379 kb on + strand, within HMPREF1181_RS14045 at 330.379 kb on + strand, within HMPREF1181_RS14045 at 330.379 kb on + strand, within HMPREF1181_RS14045 at 330.380 kb on - strand, within HMPREF1181_RS14045 at 330.454 kb on - strand, within HMPREF1181_RS14045 at 330.479 kb on + strand, within HMPREF1181_RS14045 at 330.480 kb on - strand, within HMPREF1181_RS14045 at 330.485 kb on - strand, within HMPREF1181_RS14045 at 330.559 kb on - strand, within HMPREF1181_RS14045 at 330.582 kb on - strand, within HMPREF1181_RS14045 at 330.634 kb on + strand, within HMPREF1181_RS14045 at 330.678 kb on - strand, within HMPREF1181_RS14045 at 330.680 kb on + strand, within HMPREF1181_RS14045 at 330.742 kb on + strand, within HMPREF1181_RS14045 at 330.743 kb on - strand, within HMPREF1181_RS14045 at 330.808 kb on + strand, within HMPREF1181_RS14045 at 330.906 kb on + strand, within HMPREF1181_RS14045 at 330.907 kb on - strand, within HMPREF1181_RS14045 at 331.023 kb on - strand, within HMPREF1181_RS14045 at 331.066 kb on + strand, within HMPREF1181_RS14045 at 331.067 kb on - strand, within HMPREF1181_RS14045 at 331.067 kb on - strand, within HMPREF1181_RS14045 at 331.072 kb on + strand, within HMPREF1181_RS14045 at 331.121 kb on + strand, within HMPREF1181_RS14045 at 331.121 kb on + strand, within HMPREF1181_RS14045 at 331.121 kb on + strand, within HMPREF1181_RS14045 at 331.121 kb on - strand, within HMPREF1181_RS14045 at 331.122 kb on - strand, within HMPREF1181_RS14045 at 331.333 kb on + strand, within HMPREF1181_RS14045 at 331.333 kb on + strand, within HMPREF1181_RS14045 at 331.368 kb on + strand, within HMPREF1181_RS14045 at 331.375 kb on + strand, within HMPREF1181_RS14045 at 331.375 kb on + strand, within HMPREF1181_RS14045 at 331.401 kb on + strand, within HMPREF1181_RS14045 at 331.402 kb on - strand, within HMPREF1181_RS14045 at 331.550 kb on - strand, within HMPREF1181_RS14045 at 331.596 kb on + strand, within HMPREF1181_RS14045 at 331.697 kb on - strand, within HMPREF1181_RS14045 at 331.724 kb on + strand, within HMPREF1181_RS14045 at 331.726 kb on + strand, within HMPREF1181_RS14045 at 331.727 kb on - strand, within HMPREF1181_RS14045 at 331.792 kb on + strand, within HMPREF1181_RS14045 at 331.793 kb on - strand, within HMPREF1181_RS14045 at 331.793 kb on - strand, within HMPREF1181_RS14045 at 331.796 kb on - strand, within HMPREF1181_RS14045 at 331.858 kb on + strand, within HMPREF1181_RS14045 at 331.881 kb on + strand, within HMPREF1181_RS14045 at 331.913 kb on + strand, within HMPREF1181_RS14045 at 332.074 kb on - strand, within HMPREF1181_RS14045 at 332.074 kb on - strand, within HMPREF1181_RS14045 at 332.093 kb on - strand, within HMPREF1181_RS14045 at 332.095 kb on - strand, within HMPREF1181_RS14045 at 332.095 kb on - strand, within HMPREF1181_RS14045 at 332.196 kb on + strand, within HMPREF1181_RS14045 at 332.230 kb on + strand, within HMPREF1181_RS14045 at 332.234 kb on - strand, within HMPREF1181_RS14045 at 332.274 kb on - strand, within HMPREF1181_RS14045 at 332.288 kb on - strand, within HMPREF1181_RS14045 at 332.319 kb on + strand at 332.319 kb on + strand at 332.320 kb on - strand at 332.487 kb on - strand at 332.512 kb on - strand at 332.541 kb on + strand at 332.564 kb on - strand at 332.578 kb on - strand at 332.598 kb on + strand at 332.614 kb on - strand at 332.633 kb on - strand at 332.711 kb on + strand at 332.763 kb on - strand at 332.775 kb on - strand at 332.775 kb on - strand at 332.776 kb on + strand at 332.841 kb on + strand, within HMPREF1181_RS14050 at 332.841 kb on + strand, within HMPREF1181_RS14050 at 332.850 kb on + strand, within HMPREF1181_RS14050 at 332.905 kb on + strand, within HMPREF1181_RS14050 at 332.961 kb on - strand, within HMPREF1181_RS14050 at 332.961 kb on - strand, within HMPREF1181_RS14050 at 333.022 kb on - strand, within HMPREF1181_RS14050 at 333.028 kb on + strand, within HMPREF1181_RS14050 at 333.084 kb on - strand, within HMPREF1181_RS14050 at 333.125 kb on + strand, within HMPREF1181_RS14050 at 333.125 kb on + strand, within HMPREF1181_RS14050 at 333.264 kb on + strand, within HMPREF1181_RS14050 at 333.264 kb on + strand, within HMPREF1181_RS14050 at 333.265 kb on - strand, within HMPREF1181_RS14050 at 333.265 kb on - strand, within HMPREF1181_RS14050 at 333.265 kb on - strand, within HMPREF1181_RS14050 at 333.265 kb on - strand, within HMPREF1181_RS14050 at 333.265 kb on - strand, within HMPREF1181_RS14050 at 333.323 kb on - strand, within HMPREF1181_RS14050 at 333.399 kb on + strand, within HMPREF1181_RS14050 at 333.400 kb on - strand, within HMPREF1181_RS14050 at 333.498 kb on + strand, within HMPREF1181_RS14050 at 333.499 kb on - strand, within HMPREF1181_RS14050 at 333.499 kb on - strand, within HMPREF1181_RS14050 at 333.521 kb on + strand, within HMPREF1181_RS14050 at 333.522 kb on - strand, within HMPREF1181_RS14050 at 333.522 kb on - strand, within HMPREF1181_RS14050 at 333.522 kb on - strand, within HMPREF1181_RS14050 at 333.532 kb on + strand, within HMPREF1181_RS14050 at 333.533 kb on - strand, within HMPREF1181_RS14050 at 333.535 kb on - strand, within HMPREF1181_RS14050
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 329,288 - HMPREF1181_RS14040 0.55 -0.4 329,367 + HMPREF1181_RS14040 0.63 +0.4 329,377 + HMPREF1181_RS14040 0.64 +2.6 329,378 - HMPREF1181_RS14040 0.64 -0.1 329,378 - HMPREF1181_RS14040 0.64 -2.6 329,529 + HMPREF1181_RS14040 0.80 -1.1 329,579 - HMPREF1181_RS14040 0.85 +0.6 329,603 - HMPREF1181_RS14040 0.87 -0.1 329,647 + +2.1 329,718 + -2.0 329,731 - +1.3 329,764 + +1.3 329,785 - -1.4 329,857 + -2.5 329,857 + +3.6 329,870 - +2.5 329,951 + -1.1 329,987 - +1.3 330,004 - -2.7 330,037 - -1.3 330,047 - -0.8 330,147 + -2.9 330,152 + +0.1 330,279 + +1.2 330,322 + HMPREF1181_RS14045 0.11 +3.5 330,322 + HMPREF1181_RS14045 0.11 +1.8 330,322 + HMPREF1181_RS14045 0.11 +0.9 330,377 + HMPREF1181_RS14045 0.13 +0.1 330,378 - HMPREF1181_RS14045 0.13 +1.9 330,379 + HMPREF1181_RS14045 0.14 -2.9 330,379 + HMPREF1181_RS14045 0.14 -1.2 330,379 + HMPREF1181_RS14045 0.14 +0.1 330,380 - HMPREF1181_RS14045 0.14 -0.8 330,454 - HMPREF1181_RS14045 0.16 +0.0 330,479 + HMPREF1181_RS14045 0.17 -2.5 330,480 - HMPREF1181_RS14045 0.18 +1.2 330,485 - HMPREF1181_RS14045 0.18 -1.2 330,559 - HMPREF1181_RS14045 0.21 -1.3 330,582 - HMPREF1181_RS14045 0.22 -0.1 330,634 + HMPREF1181_RS14045 0.24 +0.4 330,678 - HMPREF1181_RS14045 0.25 -1.4 330,680 + HMPREF1181_RS14045 0.25 +4.0 330,742 + HMPREF1181_RS14045 0.28 +1.4 330,743 - HMPREF1181_RS14045 0.28 +1.3 330,808 + HMPREF1181_RS14045 0.30 +1.5 330,906 + HMPREF1181_RS14045 0.34 +1.9 330,907 - HMPREF1181_RS14045 0.34 +1.0 331,023 - HMPREF1181_RS14045 0.39 -0.2 331,066 + HMPREF1181_RS14045 0.41 -1.0 331,067 - HMPREF1181_RS14045 0.41 +0.7 331,067 - HMPREF1181_RS14045 0.41 +0.2 331,072 + HMPREF1181_RS14045 0.41 -2.1 331,121 + HMPREF1181_RS14045 0.43 -0.4 331,121 + HMPREF1181_RS14045 0.43 -1.0 331,121 + HMPREF1181_RS14045 0.43 -1.9 331,121 - HMPREF1181_RS14045 0.43 +0.2 331,122 - HMPREF1181_RS14045 0.43 +0.5 331,333 + HMPREF1181_RS14045 0.51 +1.6 331,333 + HMPREF1181_RS14045 0.51 +0.9 331,368 + HMPREF1181_RS14045 0.53 +2.6 331,375 + HMPREF1181_RS14045 0.53 +0.3 331,375 + HMPREF1181_RS14045 0.53 +1.0 331,401 + HMPREF1181_RS14045 0.54 -0.2 331,402 - HMPREF1181_RS14045 0.54 -1.7 331,550 - HMPREF1181_RS14045 0.60 +1.1 331,596 + HMPREF1181_RS14045 0.62 +0.1 331,697 - HMPREF1181_RS14045 0.66 -2.0 331,724 + HMPREF1181_RS14045 0.67 +0.5 331,726 + HMPREF1181_RS14045 0.67 +1.0 331,727 - HMPREF1181_RS14045 0.67 +0.6 331,792 + HMPREF1181_RS14045 0.69 +1.5 331,793 - HMPREF1181_RS14045 0.69 +0.1 331,793 - HMPREF1181_RS14045 0.69 +1.0 331,796 - HMPREF1181_RS14045 0.70 -1.5 331,858 + HMPREF1181_RS14045 0.72 +1.7 331,881 + HMPREF1181_RS14045 0.73 +2.1 331,913 + HMPREF1181_RS14045 0.74 +1.6 332,074 - HMPREF1181_RS14045 0.81 +0.3 332,074 - HMPREF1181_RS14045 0.81 +0.9 332,093 - HMPREF1181_RS14045 0.81 +2.2 332,095 - HMPREF1181_RS14045 0.81 +0.1 332,095 - HMPREF1181_RS14045 0.81 +0.2 332,196 + HMPREF1181_RS14045 0.85 +2.5 332,230 + HMPREF1181_RS14045 0.87 +2.0 332,234 - HMPREF1181_RS14045 0.87 -5.3 332,274 - HMPREF1181_RS14045 0.88 -2.9 332,288 - HMPREF1181_RS14045 0.89 -0.7 332,319 + +1.0 332,319 + +1.6 332,320 - -3.1 332,487 - +1.4 332,512 - +2.4 332,541 + +2.6 332,564 - -0.1 332,578 - -1.8 332,598 + +2.7 332,614 - -0.0 332,633 - +2.8 332,711 + -0.3 332,763 - -3.9 332,775 - +1.4 332,775 - +1.6 332,776 + +0.7 332,841 + HMPREF1181_RS14050 0.10 +1.5 332,841 + HMPREF1181_RS14050 0.10 -0.6 332,850 + HMPREF1181_RS14050 0.11 -1.5 332,905 + HMPREF1181_RS14050 0.17 -0.8 332,961 - HMPREF1181_RS14050 0.22 +0.8 332,961 - HMPREF1181_RS14050 0.22 -4.5 333,022 - HMPREF1181_RS14050 0.28 -2.3 333,028 + HMPREF1181_RS14050 0.29 -2.1 333,084 - HMPREF1181_RS14050 0.34 +1.3 333,125 + HMPREF1181_RS14050 0.38 +0.6 333,125 + HMPREF1181_RS14050 0.38 -2.0 333,264 + HMPREF1181_RS14050 0.52 -2.0 333,264 + HMPREF1181_RS14050 0.52 -3.5 333,265 - HMPREF1181_RS14050 0.52 -3.4 333,265 - HMPREF1181_RS14050 0.52 -0.5 333,265 - HMPREF1181_RS14050 0.52 -0.6 333,265 - HMPREF1181_RS14050 0.52 +0.3 333,265 - HMPREF1181_RS14050 0.52 -1.3 333,323 - HMPREF1181_RS14050 0.57 +0.9 333,399 + HMPREF1181_RS14050 0.65 -0.2 333,400 - HMPREF1181_RS14050 0.65 -0.0 333,498 + HMPREF1181_RS14050 0.75 +3.0 333,499 - HMPREF1181_RS14050 0.75 +0.4 333,499 - HMPREF1181_RS14050 0.75 -0.4 333,521 + HMPREF1181_RS14050 0.77 -1.3 333,522 - HMPREF1181_RS14050 0.77 -0.9 333,522 - HMPREF1181_RS14050 0.77 +0.8 333,522 - HMPREF1181_RS14050 0.77 +0.1 333,532 + HMPREF1181_RS14050 0.78 -1.8 333,533 - HMPREF1181_RS14050 0.78 +0.5 333,535 - HMPREF1181_RS14050 0.78 -2.5
Or see this region's nucleotide sequence