Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04830 and HMPREF1181_RS04835 are separated by 13 nucleotides HMPREF1181_RS04835 and HMPREF1181_RS04840 are separated by 139 nucleotides
HMPREF1181_RS04830: HMPREF1181_RS04830 - aspartate 4-decarboxylase, at 226,745 to 228,364
_RS04830
HMPREF1181_RS04835: HMPREF1181_RS04835 - hypothetical protein, at 228,378 to 229,691
_RS04835
HMPREF1181_RS04840: HMPREF1181_RS04840 - sigma-54-dependent Fis family transcriptional regulator, at 229,831 to 231,189
_RS04840
Position (kb) 228
229
230 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 227.465 kb on + strand, within HMPREF1181_RS04830 at 227.466 kb on - strand, within HMPREF1181_RS04830 at 227.482 kb on - strand, within HMPREF1181_RS04830 at 227.548 kb on + strand, within HMPREF1181_RS04830 at 227.618 kb on - strand, within HMPREF1181_RS04830 at 227.633 kb on + strand, within HMPREF1181_RS04830 at 227.634 kb on - strand, within HMPREF1181_RS04830 at 227.749 kb on - strand, within HMPREF1181_RS04830 at 227.762 kb on + strand, within HMPREF1181_RS04830 at 227.762 kb on + strand, within HMPREF1181_RS04830 at 227.762 kb on + strand, within HMPREF1181_RS04830 at 227.763 kb on - strand, within HMPREF1181_RS04830 at 227.868 kb on + strand, within HMPREF1181_RS04830 at 227.952 kb on + strand, within HMPREF1181_RS04830 at 228.056 kb on - strand, within HMPREF1181_RS04830 at 228.056 kb on - strand, within HMPREF1181_RS04830 at 228.092 kb on - strand, within HMPREF1181_RS04830 at 228.150 kb on - strand, within HMPREF1181_RS04830 at 228.181 kb on - strand, within HMPREF1181_RS04830 at 228.290 kb on + strand at 228.291 kb on - strand at 228.418 kb on + strand at 228.419 kb on - strand at 228.419 kb on - strand at 228.419 kb on - strand at 228.527 kb on + strand, within HMPREF1181_RS04835 at 228.527 kb on + strand, within HMPREF1181_RS04835 at 228.565 kb on - strand, within HMPREF1181_RS04835 at 228.669 kb on - strand, within HMPREF1181_RS04835 at 228.669 kb on - strand, within HMPREF1181_RS04835 at 228.746 kb on + strand, within HMPREF1181_RS04835 at 228.827 kb on + strand, within HMPREF1181_RS04835 at 228.827 kb on + strand, within HMPREF1181_RS04835 at 228.978 kb on - strand, within HMPREF1181_RS04835 at 229.034 kb on - strand, within HMPREF1181_RS04835 at 229.110 kb on + strand, within HMPREF1181_RS04835 at 229.314 kb on - strand, within HMPREF1181_RS04835 at 229.444 kb on + strand, within HMPREF1181_RS04835 at 229.564 kb on - strand at 229.564 kb on - strand at 229.570 kb on - strand at 229.570 kb on - strand at 229.574 kb on + strand at 229.574 kb on + strand at 229.592 kb on - strand at 229.594 kb on - strand at 229.625 kb on - strand at 229.626 kb on + strand at 229.626 kb on + strand at 229.627 kb on - strand at 229.685 kb on + strand at 229.698 kb on + strand at 229.811 kb on - strand at 229.827 kb on - strand at 229.827 kb on - strand at 229.937 kb on - strand at 230.270 kb on - strand, within HMPREF1181_RS04840 at 230.292 kb on - strand, within HMPREF1181_RS04840 at 230.437 kb on - strand, within HMPREF1181_RS04840 at 230.551 kb on - strand, within HMPREF1181_RS04840 at 230.551 kb on - strand, within HMPREF1181_RS04840 at 230.647 kb on - strand, within HMPREF1181_RS04840 at 230.668 kb on - strand, within HMPREF1181_RS04840
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 227,465 + HMPREF1181_RS04830 0.44 +0.9 227,466 - HMPREF1181_RS04830 0.45 +0.7 227,482 - HMPREF1181_RS04830 0.45 +0.9 227,548 + HMPREF1181_RS04830 0.50 +1.3 227,618 - HMPREF1181_RS04830 0.54 -2.2 227,633 + HMPREF1181_RS04830 0.55 -0.9 227,634 - HMPREF1181_RS04830 0.55 +0.5 227,749 - HMPREF1181_RS04830 0.62 +1.9 227,762 + HMPREF1181_RS04830 0.63 +0.4 227,762 + HMPREF1181_RS04830 0.63 +2.1 227,762 + HMPREF1181_RS04830 0.63 -1.1 227,763 - HMPREF1181_RS04830 0.63 -3.1 227,868 + HMPREF1181_RS04830 0.69 -1.9 227,952 + HMPREF1181_RS04830 0.75 -0.3 228,056 - HMPREF1181_RS04830 0.81 +1.0 228,056 - HMPREF1181_RS04830 0.81 -0.2 228,092 - HMPREF1181_RS04830 0.83 -1.1 228,150 - HMPREF1181_RS04830 0.87 -1.1 228,181 - HMPREF1181_RS04830 0.89 -1.4 228,290 + +0.3 228,291 - +0.9 228,418 + -3.1 228,419 - -0.1 228,419 - -1.5 228,419 - -1.8 228,527 + HMPREF1181_RS04835 0.11 +1.5 228,527 + HMPREF1181_RS04835 0.11 +0.7 228,565 - HMPREF1181_RS04835 0.14 -0.2 228,669 - HMPREF1181_RS04835 0.22 +0.5 228,669 - HMPREF1181_RS04835 0.22 -1.5 228,746 + HMPREF1181_RS04835 0.28 -0.0 228,827 + HMPREF1181_RS04835 0.34 +1.1 228,827 + HMPREF1181_RS04835 0.34 +0.4 228,978 - HMPREF1181_RS04835 0.46 -1.5 229,034 - HMPREF1181_RS04835 0.50 +0.5 229,110 + HMPREF1181_RS04835 0.56 -2.8 229,314 - HMPREF1181_RS04835 0.71 -3.5 229,444 + HMPREF1181_RS04835 0.81 +1.8 229,564 - +0.5 229,564 - -4.1 229,570 - +1.4 229,570 - -2.1 229,574 + -0.2 229,574 + +1.2 229,592 - +1.5 229,594 - -0.8 229,625 - +1.1 229,626 + -1.1 229,626 + -0.9 229,627 - -0.3 229,685 + -0.2 229,698 + -1.7 229,811 - +0.4 229,827 - +0.7 229,827 - -0.6 229,937 - -1.2 230,270 - HMPREF1181_RS04840 0.32 +0.2 230,292 - HMPREF1181_RS04840 0.34 -0.0 230,437 - HMPREF1181_RS04840 0.45 -1.4 230,551 - HMPREF1181_RS04840 0.53 +1.4 230,551 - HMPREF1181_RS04840 0.53 +0.2 230,647 - HMPREF1181_RS04840 0.60 -1.1 230,668 - HMPREF1181_RS04840 0.62 +1.1
Or see this region's nucleotide sequence