Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04590 and HMPREF1181_RS04595 are separated by 29 nucleotides HMPREF1181_RS04595 and HMPREF1181_RS04600 overlap by 29 nucleotides HMPREF1181_RS04600 and HMPREF1181_RS04605 are separated by 251 nucleotides
HMPREF1181_RS04590: HMPREF1181_RS04590 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 162,578 to 163,132
_RS04590
HMPREF1181_RS04595: HMPREF1181_RS04595 - amidohydrolase, at 163,162 to 164,001
_RS04595
HMPREF1181_RS04600: HMPREF1181_RS04600 - SIMPL domain-containing protein, at 163,973 to 164,674
_RS04600
HMPREF1181_RS04605: HMPREF1181_RS04605 - N-acetylglucosamine-6-phosphate deacetylase, at 164,926 to 166,092
_RS04605
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.991 kb on - strand, within HMPREF1181_RS04590 at 162.991 kb on - strand, within HMPREF1181_RS04590 at 162.991 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.069 kb on - strand, within HMPREF1181_RS04590 at 163.137 kb on + strand at 163.213 kb on - strand at 163.350 kb on + strand, within HMPREF1181_RS04595 at 163.351 kb on - strand, within HMPREF1181_RS04595 at 163.356 kb on + strand, within HMPREF1181_RS04595 at 163.356 kb on + strand, within HMPREF1181_RS04595 at 163.356 kb on - strand, within HMPREF1181_RS04595 at 163.365 kb on - strand, within HMPREF1181_RS04595 at 163.391 kb on + strand, within HMPREF1181_RS04595 at 163.408 kb on + strand, within HMPREF1181_RS04595 at 163.409 kb on - strand, within HMPREF1181_RS04595 at 163.409 kb on - strand, within HMPREF1181_RS04595 at 163.412 kb on + strand, within HMPREF1181_RS04595 at 163.471 kb on - strand, within HMPREF1181_RS04595 at 163.587 kb on + strand, within HMPREF1181_RS04595 at 163.587 kb on + strand, within HMPREF1181_RS04595 at 163.603 kb on - strand, within HMPREF1181_RS04595 at 163.666 kb on - strand, within HMPREF1181_RS04595 at 163.694 kb on - strand, within HMPREF1181_RS04595 at 163.713 kb on - strand, within HMPREF1181_RS04595 at 163.736 kb on + strand, within HMPREF1181_RS04595 at 163.765 kb on - strand, within HMPREF1181_RS04595 at 163.819 kb on + strand, within HMPREF1181_RS04595 at 163.820 kb on - strand, within HMPREF1181_RS04595 at 163.846 kb on + strand, within HMPREF1181_RS04595 at 163.847 kb on - strand, within HMPREF1181_RS04595 at 163.974 kb on + strand at 164.015 kb on - strand at 164.021 kb on - strand at 164.023 kb on + strand at 164.025 kb on + strand at 164.096 kb on - strand, within HMPREF1181_RS04600 at 164.147 kb on - strand, within HMPREF1181_RS04600 at 164.196 kb on + strand, within HMPREF1181_RS04600 at 164.197 kb on - strand, within HMPREF1181_RS04600 at 164.206 kb on + strand, within HMPREF1181_RS04600 at 164.206 kb on + strand, within HMPREF1181_RS04600 at 164.207 kb on - strand, within HMPREF1181_RS04600 at 164.284 kb on + strand, within HMPREF1181_RS04600 at 164.284 kb on + strand, within HMPREF1181_RS04600 at 164.285 kb on - strand, within HMPREF1181_RS04600 at 164.326 kb on + strand, within HMPREF1181_RS04600 at 164.327 kb on - strand, within HMPREF1181_RS04600 at 164.341 kb on + strand, within HMPREF1181_RS04600 at 164.376 kb on - strand, within HMPREF1181_RS04600 at 164.464 kb on + strand, within HMPREF1181_RS04600 at 164.561 kb on + strand, within HMPREF1181_RS04600 at 164.573 kb on - strand, within HMPREF1181_RS04600 at 164.598 kb on - strand, within HMPREF1181_RS04600 at 164.598 kb on - strand, within HMPREF1181_RS04600 at 164.598 kb on - strand, within HMPREF1181_RS04600 at 164.608 kb on + strand at 164.608 kb on + strand at 164.608 kb on + strand at 164.609 kb on - strand at 164.612 kb on + strand at 164.627 kb on + strand at 164.628 kb on - strand at 164.645 kb on - strand at 164.691 kb on - strand at 164.701 kb on + strand at 164.725 kb on - strand at 164.785 kb on + strand at 164.805 kb on - strand at 164.818 kb on - strand at 164.874 kb on + strand at 164.897 kb on + strand at 164.911 kb on + strand at 164.926 kb on - strand at 164.940 kb on + strand at 164.952 kb on + strand at 165.066 kb on - strand, within HMPREF1181_RS04605 at 165.066 kb on - strand, within HMPREF1181_RS04605 at 165.076 kb on + strand, within HMPREF1181_RS04605 at 165.076 kb on + strand, within HMPREF1181_RS04605 at 165.076 kb on + strand, within HMPREF1181_RS04605 at 165.077 kb on - strand, within HMPREF1181_RS04605 at 165.193 kb on - strand, within HMPREF1181_RS04605 at 165.222 kb on + strand, within HMPREF1181_RS04605 at 165.222 kb on + strand, within HMPREF1181_RS04605 at 165.288 kb on + strand, within HMPREF1181_RS04605 at 165.288 kb on + strand, within HMPREF1181_RS04605 at 165.289 kb on - strand, within HMPREF1181_RS04605 at 165.316 kb on + strand, within HMPREF1181_RS04605 at 165.391 kb on - strand, within HMPREF1181_RS04605 at 165.466 kb on + strand, within HMPREF1181_RS04605 at 165.466 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.527 kb on + strand, within HMPREF1181_RS04605 at 165.532 kb on - strand, within HMPREF1181_RS04605 at 165.532 kb on - strand, within HMPREF1181_RS04605 at 165.539 kb on - strand, within HMPREF1181_RS04605 at 165.571 kb on + strand, within HMPREF1181_RS04605 at 165.572 kb on - strand, within HMPREF1181_RS04605 at 165.572 kb on - strand, within HMPREF1181_RS04605 at 165.572 kb on - strand, within HMPREF1181_RS04605 at 165.637 kb on + strand, within HMPREF1181_RS04605 at 165.637 kb on + strand, within HMPREF1181_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 162,991 - HMPREF1181_RS04590 0.74 +1.3 162,991 - HMPREF1181_RS04590 0.74 -0.6 162,991 - HMPREF1181_RS04590 0.74 -0.4 163,069 - HMPREF1181_RS04590 0.88 -1.5 163,069 - HMPREF1181_RS04590 0.88 -3.1 163,069 - HMPREF1181_RS04590 0.88 -0.3 163,069 - HMPREF1181_RS04590 0.88 -2.9 163,137 + +0.1 163,213 - +2.4 163,350 + HMPREF1181_RS04595 0.22 +0.9 163,351 - HMPREF1181_RS04595 0.23 -1.3 163,356 + HMPREF1181_RS04595 0.23 +1.3 163,356 + HMPREF1181_RS04595 0.23 -3.0 163,356 - HMPREF1181_RS04595 0.23 +0.9 163,365 - HMPREF1181_RS04595 0.24 +0.2 163,391 + HMPREF1181_RS04595 0.27 -2.0 163,408 + HMPREF1181_RS04595 0.29 +1.6 163,409 - HMPREF1181_RS04595 0.29 +1.5 163,409 - HMPREF1181_RS04595 0.29 +1.3 163,412 + HMPREF1181_RS04595 0.30 +2.4 163,471 - HMPREF1181_RS04595 0.37 +1.9 163,587 + HMPREF1181_RS04595 0.51 +1.0 163,587 + HMPREF1181_RS04595 0.51 +1.3 163,603 - HMPREF1181_RS04595 0.53 +0.5 163,666 - HMPREF1181_RS04595 0.60 +1.3 163,694 - HMPREF1181_RS04595 0.63 -0.9 163,713 - HMPREF1181_RS04595 0.66 +2.0 163,736 + HMPREF1181_RS04595 0.68 +1.6 163,765 - HMPREF1181_RS04595 0.72 +2.2 163,819 + HMPREF1181_RS04595 0.78 -2.3 163,820 - HMPREF1181_RS04595 0.78 +2.3 163,846 + HMPREF1181_RS04595 0.81 +0.5 163,847 - HMPREF1181_RS04595 0.82 -1.2 163,974 + +0.6 164,015 - +1.2 164,021 - -1.1 164,023 + -0.4 164,025 + -3.5 164,096 - HMPREF1181_RS04600 0.18 +0.1 164,147 - HMPREF1181_RS04600 0.25 -2.2 164,196 + HMPREF1181_RS04600 0.32 -3.2 164,197 - HMPREF1181_RS04600 0.32 +2.3 164,206 + HMPREF1181_RS04600 0.33 +0.0 164,206 + HMPREF1181_RS04600 0.33 +2.3 164,207 - HMPREF1181_RS04600 0.33 +0.2 164,284 + HMPREF1181_RS04600 0.44 +0.5 164,284 + HMPREF1181_RS04600 0.44 -0.4 164,285 - HMPREF1181_RS04600 0.44 -3.7 164,326 + HMPREF1181_RS04600 0.50 +1.9 164,327 - HMPREF1181_RS04600 0.50 -0.3 164,341 + HMPREF1181_RS04600 0.52 +0.0 164,376 - HMPREF1181_RS04600 0.57 +1.1 164,464 + HMPREF1181_RS04600 0.70 +1.5 164,561 + HMPREF1181_RS04600 0.84 -0.5 164,573 - HMPREF1181_RS04600 0.85 -0.2 164,598 - HMPREF1181_RS04600 0.89 -0.3 164,598 - HMPREF1181_RS04600 0.89 +0.3 164,598 - HMPREF1181_RS04600 0.89 -0.0 164,608 + +1.0 164,608 + -1.4 164,608 + +0.4 164,609 - +0.3 164,612 + -0.4 164,627 + +0.5 164,628 - +0.2 164,645 - -3.0 164,691 - -1.6 164,701 + -1.7 164,725 - -0.2 164,785 + -2.2 164,805 - +0.4 164,818 - -0.2 164,874 + -1.0 164,897 + +0.9 164,911 + +1.2 164,926 - +0.7 164,940 + +1.9 164,952 + +0.8 165,066 - HMPREF1181_RS04605 0.12 -1.5 165,066 - HMPREF1181_RS04605 0.12 -0.6 165,076 + HMPREF1181_RS04605 0.13 +0.6 165,076 + HMPREF1181_RS04605 0.13 -0.1 165,076 + HMPREF1181_RS04605 0.13 +0.1 165,077 - HMPREF1181_RS04605 0.13 -1.2 165,193 - HMPREF1181_RS04605 0.23 -0.5 165,222 + HMPREF1181_RS04605 0.25 -3.2 165,222 + HMPREF1181_RS04605 0.25 -0.6 165,288 + HMPREF1181_RS04605 0.31 -0.2 165,288 + HMPREF1181_RS04605 0.31 -1.2 165,289 - HMPREF1181_RS04605 0.31 -1.3 165,316 + HMPREF1181_RS04605 0.33 +0.5 165,391 - HMPREF1181_RS04605 0.40 +2.0 165,466 + HMPREF1181_RS04605 0.46 +0.4 165,466 + HMPREF1181_RS04605 0.46 -1.0 165,527 + HMPREF1181_RS04605 0.51 -2.7 165,527 + HMPREF1181_RS04605 0.51 -1.5 165,527 + HMPREF1181_RS04605 0.51 +0.5 165,527 + HMPREF1181_RS04605 0.51 +0.2 165,532 - HMPREF1181_RS04605 0.52 -0.1 165,532 - HMPREF1181_RS04605 0.52 +1.0 165,539 - HMPREF1181_RS04605 0.53 -2.6 165,571 + HMPREF1181_RS04605 0.55 +0.7 165,572 - HMPREF1181_RS04605 0.55 -0.8 165,572 - HMPREF1181_RS04605 0.55 -0.0 165,572 - HMPREF1181_RS04605 0.55 -1.5 165,637 + HMPREF1181_RS04605 0.61 +0.5 165,637 + HMPREF1181_RS04605 0.61 -0.1
Or see this region's nucleotide sequence