Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03370 and HMPREF1181_RS03375 are separated by 52 nucleotides HMPREF1181_RS03375 and HMPREF1181_RS03380 are separated by 82 nucleotides HMPREF1181_RS03380 and HMPREF1181_RS03385 are separated by 136 nucleotides
HMPREF1181_RS03370: HMPREF1181_RS03370 - outer membrane protein assembly factor BamA, at 856,975 to 859,614
_RS03370
HMPREF1181_RS03375: HMPREF1181_RS03375 - isoprenyl transferase, at 859,667 to 860,401
_RS03375
HMPREF1181_RS03380: HMPREF1181_RS03380 - hypothetical protein, at 860,484 to 861,848
_RS03380
HMPREF1181_RS03385: HMPREF1181_RS03385 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 861,985 to 863,028
_RS03385
Position (kb) 860
861
862 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 859.628 kb on - strand at 859.634 kb on - strand at 860.432 kb on - strand at 860.435 kb on - strand at 860.454 kb on - strand at 860.454 kb on - strand at 860.460 kb on - strand at 860.571 kb on - strand at 860.619 kb on - strand at 860.774 kb on - strand, within HMPREF1181_RS03380 at 860.783 kb on - strand, within HMPREF1181_RS03380 at 860.922 kb on - strand, within HMPREF1181_RS03380 at 860.968 kb on - strand, within HMPREF1181_RS03380 at 860.968 kb on - strand, within HMPREF1181_RS03380 at 861.143 kb on - strand, within HMPREF1181_RS03380 at 861.176 kb on - strand, within HMPREF1181_RS03380 at 861.248 kb on - strand, within HMPREF1181_RS03380 at 861.272 kb on - strand, within HMPREF1181_RS03380 at 861.421 kb on - strand, within HMPREF1181_RS03380 at 861.453 kb on - strand, within HMPREF1181_RS03380 at 861.558 kb on - strand, within HMPREF1181_RS03380 at 861.561 kb on - strand, within HMPREF1181_RS03380 at 861.633 kb on - strand, within HMPREF1181_RS03380 at 861.699 kb on - strand, within HMPREF1181_RS03380 at 861.757 kb on - strand at 861.805 kb on - strand at 861.805 kb on - strand at 861.940 kb on + strand at 861.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 859,628 - -1.2 859,634 - -4.1 860,432 - +0.9 860,435 - -1.7 860,454 - -2.4 860,454 - -2.6 860,460 - -0.9 860,571 - -0.6 860,619 - -3.6 860,774 - HMPREF1181_RS03380 0.21 -1.0 860,783 - HMPREF1181_RS03380 0.22 -2.5 860,922 - HMPREF1181_RS03380 0.32 -1.7 860,968 - HMPREF1181_RS03380 0.35 -0.9 860,968 - HMPREF1181_RS03380 0.35 -5.8 861,143 - HMPREF1181_RS03380 0.48 -1.1 861,176 - HMPREF1181_RS03380 0.51 -0.6 861,248 - HMPREF1181_RS03380 0.56 +0.0 861,272 - HMPREF1181_RS03380 0.58 -3.6 861,421 - HMPREF1181_RS03380 0.69 -5.0 861,453 - HMPREF1181_RS03380 0.71 -1.1 861,558 - HMPREF1181_RS03380 0.79 -0.2 861,561 - HMPREF1181_RS03380 0.79 -2.6 861,633 - HMPREF1181_RS03380 0.84 -2.0 861,699 - HMPREF1181_RS03380 0.89 -2.3 861,757 - -2.4 861,805 - -4.4 861,805 - -1.8 861,940 + -4.3 861,987 - -1.7
Or see this region's nucleotide sequence