Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26110 and LU632_RS26115 overlap by 4 nucleotides LU632_RS26115 and LU632_RS26120 are separated by 134 nucleotides LU632_RS26120 and LU632_RS26125 overlap by 7 nucleotides LU632_RS26125 and LU632_RS26130 are separated by 93 nucleotides LU632_RS26130 and LU632_RS26135 are separated by 67 nucleotides
LU632_RS26110: LU632_RS26110 - ParA family protein, at 26,965 to 27,588
_RS26110
LU632_RS26115: LU632_RS26115 - hypothetical protein, at 27,585 to 27,812
_RS26115
LU632_RS26120: LU632_RS26120 - WGR domain-containing protein, at 27,947 to 28,162
_RS26120
LU632_RS26125: LU632_RS26125 - DUF551 domain-containing protein, at 28,156 to 28,341
_RS26125
LU632_RS26130: LU632_RS26130 - hypothetical protein, at 28,435 to 28,794
_RS26130
LU632_RS26135: LU632_RS26135 - hypothetical protein, at 28,862 to 29,215
_RS26135
Position (kb) 27
28
29 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 27.003 kb on + strand at 27.004 kb on - strand at 27.015 kb on - strand at 27.134 kb on + strand, within LU632_RS26110 at 27.135 kb on - strand, within LU632_RS26110 at 27.135 kb on - strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.215 kb on + strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.216 kb on - strand, within LU632_RS26110 at 27.477 kb on + strand, within LU632_RS26110 at 27.477 kb on + strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.478 kb on - strand, within LU632_RS26110 at 27.521 kb on - strand, within LU632_RS26110 at 27.928 kb on - strand at 27.935 kb on + strand at 27.936 kb on - strand at 27.946 kb on + strand at 27.947 kb on - strand at 27.947 kb on - strand at 27.968 kb on - strand at 27.977 kb on + strand, within LU632_RS26120 at 28.032 kb on - strand, within LU632_RS26120 at 28.159 kb on + strand at 28.160 kb on + strand at 28.160 kb on + strand at 28.161 kb on - strand at 28.161 kb on - strand at 28.161 kb on - strand at 28.198 kb on - strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.204 kb on + strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.205 kb on - strand, within LU632_RS26125 at 28.262 kb on + strand, within LU632_RS26125 at 28.263 kb on - strand, within LU632_RS26125 at 28.303 kb on - strand, within LU632_RS26125 at 28.546 kb on + strand, within LU632_RS26130 at 28.546 kb on + strand, within LU632_RS26130 at 28.546 kb on + strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.547 kb on - strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.548 kb on + strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.549 kb on - strand, within LU632_RS26130 at 28.596 kb on + strand, within LU632_RS26130 at 28.596 kb on + strand, within LU632_RS26130 at 28.652 kb on - strand, within LU632_RS26130 at 28.674 kb on + strand, within LU632_RS26130 at 28.675 kb on - strand, within LU632_RS26130 at 28.684 kb on + strand, within LU632_RS26130 at 28.685 kb on - strand, within LU632_RS26130 at 28.786 kb on + strand at 28.786 kb on + strand at 28.786 kb on + strand at 28.786 kb on + strand at 28.787 kb on - strand at 28.787 kb on - strand at 28.813 kb on + strand at 28.871 kb on + strand at 28.871 kb on + strand at 28.872 kb on - strand at 28.872 kb on - strand at 28.872 kb on - strand at 28.956 kb on - strand, within LU632_RS26135 at 29.034 kb on + strand, within LU632_RS26135 at 29.034 kb on + strand, within LU632_RS26135 at 29.034 kb on + strand, within LU632_RS26135 at 29.034 kb on + strand, within LU632_RS26135 at 29.077 kb on + strand, within LU632_RS26135 at 29.078 kb on - strand, within LU632_RS26135 at 29.078 kb on - strand, within LU632_RS26135 at 29.080 kb on + strand, within LU632_RS26135 at 29.081 kb on - strand, within LU632_RS26135 at 29.125 kb on + strand, within LU632_RS26135 at 29.126 kb on - strand, within LU632_RS26135 at 29.126 kb on - strand, within LU632_RS26135 at 29.126 kb on - strand, within LU632_RS26135
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 27,003 + -3.4 27,004 - -2.9 27,015 - -0.7 27,134 + LU632_RS26110 0.27 +0.1 27,135 - LU632_RS26110 0.27 +3.1 27,135 - LU632_RS26110 0.27 -5.3 27,215 + LU632_RS26110 0.40 -2.9 27,215 + LU632_RS26110 0.40 -2.7 27,215 + LU632_RS26110 0.40 -2.5 27,215 + LU632_RS26110 0.40 +0.3 27,215 + LU632_RS26110 0.40 -2.0 27,216 - LU632_RS26110 0.40 -2.0 27,216 - LU632_RS26110 0.40 +0.3 27,216 - LU632_RS26110 0.40 -2.3 27,216 - LU632_RS26110 0.40 -3.7 27,216 - LU632_RS26110 0.40 -0.7 27,477 + LU632_RS26110 0.82 -1.3 27,477 + LU632_RS26110 0.82 -1.7 27,478 - LU632_RS26110 0.82 -1.2 27,478 - LU632_RS26110 0.82 -2.3 27,478 - LU632_RS26110 0.82 -3.8 27,478 - LU632_RS26110 0.82 -1.7 27,478 - LU632_RS26110 0.82 -2.0 27,478 - LU632_RS26110 0.82 -0.7 27,478 - LU632_RS26110 0.82 +7.2 27,521 - LU632_RS26110 0.89 -2.5 27,928 - +1.3 27,935 + -1.3 27,936 - +1.2 27,946 + -2.3 27,947 - -4.0 27,947 - +1.0 27,968 - +0.8 27,977 + LU632_RS26120 0.14 -4.6 28,032 - LU632_RS26120 0.39 -1.7 28,159 + -1.7 28,160 + -4.2 28,160 + -0.7 28,161 - -3.7 28,161 - -1.7 28,161 - +0.3 28,198 - LU632_RS26125 0.23 +0.8 28,204 + LU632_RS26125 0.26 +1.0 28,204 + LU632_RS26125 0.26 -3.2 28,204 + LU632_RS26125 0.26 +1.4 28,204 + LU632_RS26125 0.26 +2.9 28,205 - LU632_RS26125 0.26 +1.0 28,205 - LU632_RS26125 0.26 +1.7 28,205 - LU632_RS26125 0.26 +1.9 28,205 - LU632_RS26125 0.26 -2.0 28,205 - LU632_RS26125 0.26 +0.5 28,205 - LU632_RS26125 0.26 -4.4 28,262 + LU632_RS26125 0.57 -2.1 28,263 - LU632_RS26125 0.58 +2.7 28,303 - LU632_RS26125 0.79 -3.2 28,546 + LU632_RS26130 0.31 +0.5 28,546 + LU632_RS26130 0.31 +1.2 28,546 + LU632_RS26130 0.31 +2.1 28,547 - LU632_RS26130 0.31 +0.2 28,547 - LU632_RS26130 0.31 -4.1 28,547 - LU632_RS26130 0.31 +1.1 28,547 - LU632_RS26130 0.31 +0.5 28,547 - LU632_RS26130 0.31 -3.9 28,547 - LU632_RS26130 0.31 -4.3 28,547 - LU632_RS26130 0.31 +0.2 28,548 + LU632_RS26130 0.31 -0.2 28,548 + LU632_RS26130 0.31 -2.9 28,548 + LU632_RS26130 0.31 +1.8 28,548 + LU632_RS26130 0.31 -0.9 28,548 + LU632_RS26130 0.31 -0.7 28,549 - LU632_RS26130 0.32 +0.3 28,549 - LU632_RS26130 0.32 -5.9 28,549 - LU632_RS26130 0.32 -5.2 28,549 - LU632_RS26130 0.32 -2.3 28,549 - LU632_RS26130 0.32 -2.7 28,549 - LU632_RS26130 0.32 +1.6 28,549 - LU632_RS26130 0.32 -3.2 28,549 - LU632_RS26130 0.32 -1.6 28,549 - LU632_RS26130 0.32 +0.8 28,596 + LU632_RS26130 0.45 -4.1 28,596 + LU632_RS26130 0.45 +0.2 28,652 - LU632_RS26130 0.60 +2.1 28,674 + LU632_RS26130 0.66 +1.9 28,675 - LU632_RS26130 0.67 -3.4 28,684 + LU632_RS26130 0.69 -2.0 28,685 - LU632_RS26130 0.69 +0.1 28,786 + +0.8 28,786 + +1.7 28,786 + +2.1 28,786 + -4.8 28,787 - +1.0 28,787 - -3.9 28,813 + -2.9 28,871 + -3.0 28,871 + +1.0 28,872 - -1.3 28,872 - +3.3 28,872 - -3.4 28,956 - LU632_RS26135 0.27 +0.4 29,034 + LU632_RS26135 0.49 +0.1 29,034 + LU632_RS26135 0.49 -2.0 29,034 + LU632_RS26135 0.49 -5.8 29,034 + LU632_RS26135 0.49 -1.8 29,077 + LU632_RS26135 0.61 +0.3 29,078 - LU632_RS26135 0.61 -3.2 29,078 - LU632_RS26135 0.61 +0.9 29,080 + LU632_RS26135 0.62 -2.3 29,081 - LU632_RS26135 0.62 +1.1 29,125 + LU632_RS26135 0.74 -1.3 29,126 - LU632_RS26135 0.75 -0.6 29,126 - LU632_RS26135 0.75 -3.0 29,126 - LU632_RS26135 0.75 +0.7
Or see this region's nucleotide sequence