Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25610 and LU632_RS25615 are separated by 94 nucleotides LU632_RS25615 and LU632_RS25620 are separated by 17 nucleotides LU632_RS25620 and LU632_RS25625 are separated by 77 nucleotides
LU632_RS25610: LU632_RS25610 - antitermination protein NusG, at 53,664 to 54,122
_RS25610
LU632_RS25615: LU632_RS25615 - hypothetical protein, at 54,217 to 54,465
_RS25615
LU632_RS25620: LU632_RS25620 - hypothetical protein, at 54,483 to 54,683
_RS25620
LU632_RS25625: LU632_RS25625 - toxin co-regulated pilus biosynthesis Q family protein, at 54,761 to 55,768
_RS25625
Position (kb) 54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 53.508 kb on + strand at 53.508 kb on + strand at 53.509 kb on - strand at 53.511 kb on - strand at 53.633 kb on + strand at 53.633 kb on + strand at 53.633 kb on + strand at 53.634 kb on - strand at 53.636 kb on - strand at 53.639 kb on + strand at 53.676 kb on + strand at 53.746 kb on + strand, within LU632_RS25610 at 53.839 kb on + strand, within LU632_RS25610 at 53.950 kb on + strand, within LU632_RS25610 at 53.978 kb on - strand, within LU632_RS25610 at 54.010 kb on + strand, within LU632_RS25610 at 54.011 kb on - strand, within LU632_RS25610 at 54.012 kb on + strand, within LU632_RS25610 at 54.013 kb on - strand, within LU632_RS25610 at 54.013 kb on - strand, within LU632_RS25610 at 54.014 kb on + strand, within LU632_RS25610 at 54.015 kb on - strand, within LU632_RS25610 at 54.015 kb on - strand, within LU632_RS25610 at 54.024 kb on - strand, within LU632_RS25610 at 54.024 kb on - strand, within LU632_RS25610 at 54.098 kb on + strand at 54.138 kb on + strand at 54.138 kb on + strand at 54.139 kb on - strand at 54.140 kb on + strand at 54.153 kb on - strand at 54.188 kb on + strand at 54.206 kb on + strand at 54.206 kb on + strand at 54.206 kb on + strand at 54.206 kb on + strand at 54.207 kb on - strand at 54.207 kb on - strand at 54.207 kb on - strand at 54.217 kb on - strand at 54.237 kb on - strand at 54.253 kb on - strand, within LU632_RS25615 at 54.309 kb on + strand, within LU632_RS25615 at 54.315 kb on - strand, within LU632_RS25615 at 54.402 kb on + strand, within LU632_RS25615 at 54.403 kb on - strand, within LU632_RS25615 at 54.403 kb on - strand, within LU632_RS25615 at 54.403 kb on - strand, within LU632_RS25615 at 54.437 kb on + strand, within LU632_RS25615 at 54.463 kb on + strand at 54.464 kb on - strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.482 kb on + strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.483 kb on - strand at 54.488 kb on + strand at 54.515 kb on + strand, within LU632_RS25620 at 54.545 kb on + strand, within LU632_RS25620 at 54.591 kb on - strand, within LU632_RS25620 at 54.628 kb on + strand, within LU632_RS25620 at 54.629 kb on - strand, within LU632_RS25620 at 54.672 kb on + strand at 54.673 kb on - strand at 54.684 kb on + strand at 54.685 kb on - strand at 54.773 kb on + strand at 54.773 kb on + strand at 54.774 kb on - strand at 54.882 kb on + strand, within LU632_RS25625 at 54.933 kb on + strand, within LU632_RS25625 at 54.933 kb on + strand, within LU632_RS25625 at 54.934 kb on - strand, within LU632_RS25625 at 54.969 kb on + strand, within LU632_RS25625 at 54.969 kb on + strand, within LU632_RS25625 at 54.969 kb on + strand, within LU632_RS25625 at 54.970 kb on - strand, within LU632_RS25625 at 55.014 kb on + strand, within LU632_RS25625 at 55.107 kb on + strand, within LU632_RS25625 at 55.141 kb on + strand, within LU632_RS25625 at 55.141 kb on + strand, within LU632_RS25625 at 55.142 kb on - strand, within LU632_RS25625 at 55.143 kb on + strand, within LU632_RS25625 at 55.143 kb on + strand, within LU632_RS25625 at 55.144 kb on - strand, within LU632_RS25625 at 55.208 kb on + strand, within LU632_RS25625 at 55.208 kb on + strand, within LU632_RS25625 at 55.209 kb on - strand, within LU632_RS25625 at 55.286 kb on + strand, within LU632_RS25625 at 55.286 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.287 kb on - strand, within LU632_RS25625 at 55.288 kb on + strand, within LU632_RS25625 at 55.288 kb on + strand, within LU632_RS25625 at 55.538 kb on + strand, within LU632_RS25625 at 55.539 kb on - strand, within LU632_RS25625 at 55.539 kb on - strand, within LU632_RS25625 at 55.539 kb on - strand, within LU632_RS25625 at 55.617 kb on - strand, within LU632_RS25625 at 55.654 kb on + strand, within LU632_RS25625 at 55.655 kb on - strand, within LU632_RS25625
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 53,508 + -0.3 53,508 + +0.3 53,509 - -2.5 53,511 - +0.5 53,633 + -2.7 53,633 + -3.6 53,633 + -2.7 53,634 - +0.8 53,636 - -3.2 53,639 + -1.2 53,676 + +0.4 53,746 + LU632_RS25610 0.18 +0.2 53,839 + LU632_RS25610 0.38 -2.3 53,950 + LU632_RS25610 0.62 -0.7 53,978 - LU632_RS25610 0.68 +3.6 54,010 + LU632_RS25610 0.75 +1.4 54,011 - LU632_RS25610 0.76 -0.4 54,012 + LU632_RS25610 0.76 -1.3 54,013 - LU632_RS25610 0.76 -0.1 54,013 - LU632_RS25610 0.76 -0.3 54,014 + LU632_RS25610 0.76 -0.7 54,015 - LU632_RS25610 0.76 +2.3 54,015 - LU632_RS25610 0.76 -1.2 54,024 - LU632_RS25610 0.78 -3.3 54,024 - LU632_RS25610 0.78 -3.0 54,098 + -0.7 54,138 + +0.5 54,138 + +1.5 54,139 - -2.4 54,140 + -2.2 54,153 - -0.2 54,188 + -3.2 54,206 + +1.0 54,206 + -2.3 54,206 + -1.2 54,206 + +0.7 54,207 - -0.0 54,207 - +1.0 54,207 - -0.7 54,217 - +2.2 54,237 - -0.9 54,253 - LU632_RS25615 0.14 -2.2 54,309 + LU632_RS25615 0.37 +0.8 54,315 - LU632_RS25615 0.39 -2.3 54,402 + LU632_RS25615 0.74 -0.7 54,403 - LU632_RS25615 0.75 -0.2 54,403 - LU632_RS25615 0.75 -3.1 54,403 - LU632_RS25615 0.75 +1.4 54,437 + LU632_RS25615 0.88 -2.0 54,463 + +0.8 54,464 - +1.3 54,482 + +2.3 54,482 + -1.5 54,482 + +0.0 54,482 + +1.7 54,482 + -3.0 54,482 + -3.3 54,482 + -2.5 54,482 + -2.0 54,483 - -3.6 54,483 - -0.7 54,483 - +0.4 54,483 - -1.5 54,483 - -0.7 54,483 - +0.1 54,483 - -1.7 54,483 - +0.8 54,488 + -0.2 54,515 + LU632_RS25620 0.16 -1.7 54,545 + LU632_RS25620 0.31 -2.1 54,591 - LU632_RS25620 0.54 -1.7 54,628 + LU632_RS25620 0.72 -0.6 54,629 - LU632_RS25620 0.73 -2.2 54,672 + -0.6 54,673 - +0.6 54,684 + +1.2 54,685 - +3.1 54,773 + -0.9 54,773 + -2.5 54,774 - +2.8 54,882 + LU632_RS25625 0.12 +0.8 54,933 + LU632_RS25625 0.17 -0.0 54,933 + LU632_RS25625 0.17 +0.3 54,934 - LU632_RS25625 0.17 +0.5 54,969 + LU632_RS25625 0.21 -2.5 54,969 + LU632_RS25625 0.21 -2.9 54,969 + LU632_RS25625 0.21 -3.1 54,970 - LU632_RS25625 0.21 -1.2 55,014 + LU632_RS25625 0.25 +4.6 55,107 + LU632_RS25625 0.34 -0.9 55,141 + LU632_RS25625 0.38 +1.6 55,141 + LU632_RS25625 0.38 +0.8 55,142 - LU632_RS25625 0.38 +2.4 55,143 + LU632_RS25625 0.38 -3.4 55,143 + LU632_RS25625 0.38 +3.0 55,144 - LU632_RS25625 0.38 -3.8 55,208 + LU632_RS25625 0.44 +0.3 55,208 + LU632_RS25625 0.44 -2.6 55,209 - LU632_RS25625 0.44 -2.6 55,286 + LU632_RS25625 0.52 +0.5 55,286 - LU632_RS25625 0.52 -0.2 55,287 - LU632_RS25625 0.52 +0.7 55,287 - LU632_RS25625 0.52 +0.2 55,287 - LU632_RS25625 0.52 +0.8 55,287 - LU632_RS25625 0.52 -2.0 55,287 - LU632_RS25625 0.52 -2.0 55,287 - LU632_RS25625 0.52 -2.2 55,287 - LU632_RS25625 0.52 -0.7 55,288 + LU632_RS25625 0.52 +0.8 55,288 + LU632_RS25625 0.52 +0.8 55,538 + LU632_RS25625 0.77 -0.0 55,539 - LU632_RS25625 0.77 -1.7 55,539 - LU632_RS25625 0.77 -1.5 55,539 - LU632_RS25625 0.77 -3.2 55,617 - LU632_RS25625 0.85 -2.3 55,654 + LU632_RS25625 0.89 +0.4 55,655 - LU632_RS25625 0.89 +1.0
Or see this region's nucleotide sequence