Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25555

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25545 and LU632_RS25550 are separated by 194 nucleotidesLU632_RS25550 and LU632_RS25555 are separated by 3 nucleotidesLU632_RS25555 and LU632_RS25560 are separated by 339 nucleotidesLU632_RS25560 and LU632_RS25565 overlap by 4 nucleotides LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623 _RS25545 LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318 _RS25550 LU632_RS25555: LU632_RS25555 - IS6 family transposase, at 41,322 to 41,429 _RS25555 LU632_RS25560: LU632_RS25560 - AAA family ATPase, at 41,769 to 42,395 _RS25560 LU632_RS25565: LU632_RS25565 - hypothetical protein, at 42,392 to 42,694 _RS25565 Position (kb) 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 40.326 kb on + strandat 40.326 kb on + strandat 40.354 kb on + strandat 40.372 kb on + strandat 40.373 kb on - strandat 40.455 kb on - strandat 40.461 kb on + strandat 40.470 kb on - strand, within LU632_RS25545at 40.494 kb on + strand, within LU632_RS25545at 40.665 kb on + strandat 40.674 kb on + strandat 40.674 kb on + strandat 40.674 kb on + strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.675 kb on - strandat 40.696 kb on + strandat 40.696 kb on + strandat 40.696 kb on + strandat 40.697 kb on - strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.719 kb on + strandat 40.719 kb on + strandat 40.719 kb on + strandat 40.720 kb on - strandat 40.730 kb on + strandat 40.760 kb on + strandat 40.761 kb on - strandat 40.768 kb on + strandat 40.768 kb on + strandat 40.769 kb on - strandat 40.769 kb on - strandat 40.782 kb on - strandat 40.852 kb on - strandat 40.901 kb on - strand, within LU632_RS25550at 40.912 kb on - strand, within LU632_RS25550at 40.912 kb on - strand, within LU632_RS25550at 40.913 kb on + strand, within LU632_RS25550at 40.913 kb on + strand, within LU632_RS25550at 40.914 kb on - strand, within LU632_RS25550at 40.914 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.920 kb on - strand, within LU632_RS25550at 40.922 kb on - strand, within LU632_RS25550at 40.922 kb on - strand, within LU632_RS25550at 41.204 kb on - strand, within LU632_RS25550at 41.204 kb on - strand, within LU632_RS25550at 41.374 kb on - strand, within LU632_RS25555at 41.428 kb on - strandat 41.454 kb on - strandat 41.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
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40,326 + -1.7
40,326 + -1.3
40,354 + +0.8
40,372 + +0.8
40,373 - +0.3
40,455 - -2.7
40,461 + -3.2
40,470 - LU632_RS25545 0.10 -3.9
40,494 + LU632_RS25545 0.24 -4.1
40,665 + +3.1
40,674 + +1.2
40,674 + -2.0
40,674 + -1.2
40,675 - -3.4
40,675 - -2.5
40,675 - +0.8
40,675 - +0.8
40,675 - -1.3
40,675 - -0.5
40,675 - +1.1
40,675 - +0.4
40,696 + +3.0
40,696 + +0.5
40,696 + -1.4
40,697 - -0.1
40,713 + +0.8
40,713 + -1.4
40,719 + -0.8
40,719 + +1.9
40,719 + +0.8
40,720 - +0.0
40,730 + -0.2
40,760 + +1.2
40,761 - +0.1
40,768 + -2.9
40,768 + +0.1
40,769 - -0.6
40,769 - +0.5
40,782 - -1.3
40,852 - +0.2
40,901 - LU632_RS25550 0.17 -1.8
40,912 - LU632_RS25550 0.19 +0.9
40,912 - LU632_RS25550 0.19 -0.7
40,913 + LU632_RS25550 0.19 +2.8
40,913 + LU632_RS25550 0.19 -1.7
40,914 - LU632_RS25550 0.19 -1.0
40,914 - LU632_RS25550 0.19 -0.2
40,920 - LU632_RS25550 0.20 -2.2
40,920 - LU632_RS25550 0.20 +1.4
40,920 - LU632_RS25550 0.20 +0.1
40,920 - LU632_RS25550 0.20 -0.4
40,920 - LU632_RS25550 0.20 -0.2
40,920 - LU632_RS25550 0.20 -2.4
40,922 - LU632_RS25550 0.21 -2.5
40,922 - LU632_RS25550 0.21 -0.2
41,204 - LU632_RS25550 0.77 -2.7
41,204 - LU632_RS25550 0.77 -0.7
41,374 - LU632_RS25555 0.48 -0.1
41,428 - +0.4
41,454 - +0.2
41,627 + -2.3

Or see this region's nucleotide sequence