Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25535 and LU632_RS25540 are separated by 48 nucleotides LU632_RS25540 and LU632_RS25545 are separated by 135 nucleotides LU632_RS25545 and LU632_RS25550 are separated by 194 nucleotides LU632_RS25550 and LU632_RS25555 are separated by 3 nucleotides
LU632_RS25535: LU632_RS25535 - MFS transporter, at 38,545 to 39,690
_RS25535
LU632_RS25540: LU632_RS25540 - DUF1349 domain-containing protein, at 39,739 to 40,317
_RS25540
LU632_RS25545: LU632_RS25545 - helix-turn-helix domain-containing protein, at 40,453 to 40,623
_RS25545
LU632_RS25550: LU632_RS25550 - Tn3 family transposase, at 40,818 to 41,318
_RS25550
LU632_RS25555: LU632_RS25555 - IS6 family transposase, at 41,322 to 41,429
_RS25555
Position (kb) 40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 39.468 kb on + strand, within LU632_RS25535 at 39.468 kb on + strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.469 kb on - strand, within LU632_RS25535 at 39.607 kb on + strand at 39.607 kb on + strand at 39.664 kb on + strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.665 kb on - strand at 39.670 kb on - strand at 39.670 kb on - strand at 39.675 kb on + strand at 39.676 kb on - strand at 39.677 kb on + strand at 39.701 kb on + strand at 39.701 kb on + strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.702 kb on - strand at 39.703 kb on + strand at 39.703 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.704 kb on - strand at 39.719 kb on + strand at 39.719 kb on + strand at 39.720 kb on - strand at 39.720 kb on - strand at 39.736 kb on + strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.737 kb on - strand at 39.809 kb on + strand, within LU632_RS25540 at 39.809 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 39.810 kb on - strand, within LU632_RS25540 at 40.040 kb on + strand, within LU632_RS25540 at 40.312 kb on - strand at 40.315 kb on + strand at 40.321 kb on + strand at 40.326 kb on + strand at 40.326 kb on + strand at 40.354 kb on + strand at 40.372 kb on + strand at 40.373 kb on - strand at 40.455 kb on - strand at 40.461 kb on + strand at 40.470 kb on - strand, within LU632_RS25545 at 40.494 kb on + strand, within LU632_RS25545 at 40.665 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.674 kb on + strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.675 kb on - strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.696 kb on + strand at 40.697 kb on - strand at 40.713 kb on + strand at 40.713 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.719 kb on + strand at 40.720 kb on - strand at 40.730 kb on + strand at 40.760 kb on + strand at 40.761 kb on - strand at 40.768 kb on + strand at 40.768 kb on + strand at 40.769 kb on - strand at 40.769 kb on - strand at 40.782 kb on - strand at 40.852 kb on - strand at 40.901 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.912 kb on - strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.913 kb on + strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.914 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.920 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 40.922 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.204 kb on - strand, within LU632_RS25550 at 41.374 kb on - strand, within LU632_RS25555 at 41.428 kb on - strand at 41.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 39,468 + LU632_RS25535 0.81 -2.2 39,468 + LU632_RS25535 0.81 -2.0 39,469 - LU632_RS25535 0.81 -0.3 39,469 - LU632_RS25535 0.81 -0.1 39,607 + -0.4 39,607 + +0.4 39,664 + -0.6 39,665 - -0.6 39,665 - -0.0 39,665 - -2.3 39,670 - -0.7 39,670 - +0.2 39,675 + +0.3 39,676 - +0.4 39,677 + +1.3 39,701 + -3.0 39,701 + +0.6 39,702 - +2.0 39,702 - +0.8 39,702 - +1.4 39,702 - -2.6 39,702 - -1.7 39,702 - +0.2 39,702 - +1.5 39,703 + -0.8 39,703 - +0.9 39,704 - -3.0 39,704 - +0.8 39,704 - -0.7 39,704 - +1.8 39,719 + -0.7 39,719 + -0.5 39,720 - -1.5 39,720 - -2.3 39,736 + +1.4 39,737 - +0.0 39,737 - -1.1 39,737 - -0.2 39,809 + LU632_RS25540 0.12 -0.2 39,809 - LU632_RS25540 0.12 +0.3 39,810 - LU632_RS25540 0.12 +0.1 39,810 - LU632_RS25540 0.12 +0.0 39,810 - LU632_RS25540 0.12 -0.7 40,040 + LU632_RS25540 0.52 -0.0 40,312 - +1.8 40,315 + +0.2 40,321 + +1.9 40,326 + -1.7 40,326 + -1.3 40,354 + +0.8 40,372 + +0.8 40,373 - +0.3 40,455 - -2.7 40,461 + -3.2 40,470 - LU632_RS25545 0.10 -3.9 40,494 + LU632_RS25545 0.24 -4.1 40,665 + +3.1 40,674 + +1.2 40,674 + -2.0 40,674 + -1.2 40,675 - -3.4 40,675 - -2.5 40,675 - +0.8 40,675 - +0.8 40,675 - -1.3 40,675 - -0.5 40,675 - +1.1 40,675 - +0.4 40,696 + +3.0 40,696 + +0.5 40,696 + -1.4 40,697 - -0.1 40,713 + +0.8 40,713 + -1.4 40,719 + -0.8 40,719 + +1.9 40,719 + +0.8 40,720 - +0.0 40,730 + -0.2 40,760 + +1.2 40,761 - +0.1 40,768 + -2.9 40,768 + +0.1 40,769 - -0.6 40,769 - +0.5 40,782 - -1.3 40,852 - +0.2 40,901 - LU632_RS25550 0.17 -1.8 40,912 - LU632_RS25550 0.19 +0.9 40,912 - LU632_RS25550 0.19 -0.7 40,913 + LU632_RS25550 0.19 +2.8 40,913 + LU632_RS25550 0.19 -1.7 40,914 - LU632_RS25550 0.19 -1.0 40,914 - LU632_RS25550 0.19 -0.2 40,920 - LU632_RS25550 0.20 -2.2 40,920 - LU632_RS25550 0.20 +1.4 40,920 - LU632_RS25550 0.20 +0.1 40,920 - LU632_RS25550 0.20 -0.4 40,920 - LU632_RS25550 0.20 -0.2 40,920 - LU632_RS25550 0.20 -2.4 40,922 - LU632_RS25550 0.21 -2.5 40,922 - LU632_RS25550 0.21 -0.2 41,204 - LU632_RS25550 0.77 -2.7 41,204 - LU632_RS25550 0.77 -0.7 41,374 - LU632_RS25555 0.48 -0.1 41,428 - +0.4 41,454 - +0.2
Or see this region's nucleotide sequence