Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25495

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
30,991	-				-2.2
31,001	+				+0.8
31,017	-		LU632_RS25490	0.12	+1.7
31,017	-		LU632_RS25490	0.12	+1.3
31,017	-		LU632_RS25490	0.12	-0.8
31,053	-		LU632_RS25490	0.18	+0.6
31,096	+		LU632_RS25490	0.26	+2.8
31,097	-		LU632_RS25490	0.26	-3.1
31,097	-		LU632_RS25490	0.26	+0.4
31,097	-		LU632_RS25490	0.26	-2.3
31,151	+		LU632_RS25490	0.35	-0.2
31,152	-		LU632_RS25490	0.36	-0.6
31,175	+		LU632_RS25490	0.40	-2.6
31,199	+		LU632_RS25490	0.44	-0.3
31,199	+		LU632_RS25490	0.44	+0.3
31,230	+		LU632_RS25490	0.49	+0.2
31,230	+		LU632_RS25490	0.49	+1.3
31,230	+		LU632_RS25490	0.49	-1.2
31,230	+		LU632_RS25490	0.49	-1.5
31,230	+		LU632_RS25490	0.49	-0.3
31,230	+		LU632_RS25490	0.49	-2.9
31,230	+		LU632_RS25490	0.49	+0.3
31,230	+		LU632_RS25490	0.49	+0.6
31,230	+		LU632_RS25490	0.49	+0.8
31,230	+		LU632_RS25490	0.49	-2.2
31,231	-		LU632_RS25490	0.49	+1.8
31,231	-		LU632_RS25490	0.49	+3.4
31,231	-		LU632_RS25490	0.49	-0.4
31,295	+		LU632_RS25490	0.60	-0.7
31,295	+		LU632_RS25490	0.60	-1.5
31,295	+		LU632_RS25490	0.60	-2.0
31,296	-		LU632_RS25490	0.60	+0.6
31,354	+		LU632_RS25490	0.70	-0.2
31,834	+				-1.5
31,835	-				-1.2
31,910	-				+1.5
31,934	+				+0.1
31,935	-				-3.3
31,935	-				+0.4
32,101	-		LU632_RS25495	0.50	-2.5
32,344	-		LU632_RS25500	0.28	-2.5
32,348	-		LU632_RS25500	0.29	+1.4
32,348	-		LU632_RS25500	0.29	-0.6
32,388	+		LU632_RS25500	0.40	-1.4
32,389	-		LU632_RS25500	0.41	+0.8
32,389	-		LU632_RS25500	0.41	-0.6
32,420	-		LU632_RS25500	0.50	-1.5
32,444	+		LU632_RS25500	0.57	+1.5
32,522	-		LU632_RS25500	0.79	-0.0
32,553	+		LU632_RS25500	0.88	-1.1
32,554	-		LU632_RS25500	0.88	+0.4
32,576	+				-0.3
32,579	-				+0.9
32,579	-				-0.4
32,579	-				+0.5
32,579	-				+0.8
32,583	-				-1.7
32,590	-				-0.2
32,590	-				-2.7
32,679	+				+4.6
32,679	+				+0.7
32,679	+				+0.5
32,679	+				+1.4
32,679	+				+1.7
32,679	+				+0.6
32,679	+				+0.1
32,679	+				-0.2
32,679	+				-0.7
32,679	+				-0.8
32,679	+				-1.2
32,680	-				-1.2
32,680	-				-1.7
32,680	-				+0.3
32,680	-				-3.4
32,680	-				+0.7
32,680	-				+0.8
32,680	-				+3.4
32,680	-				-0.2
32,680	-				+0.7
32,741	+				+2.7
32,741	+				-1.5
32,741	+				+1.7
32,741	+				+0.2
32,741	+				-0.6
32,741	+				-1.2
32,741	+				-0.7
32,741	+				+0.4
32,742	-				-0.4
32,742	-				-0.2
32,742	-				+1.0
32,742	-				+1.1
32,859	+				-0.2
32,928	+		LU632_RS25505	0.27	+0.5
32,929	+		LU632_RS25505	0.27	+2.2
32,929	-		LU632_RS25505	0.27	-0.6
32,962	+		LU632_RS25505	0.38	-1.2
33,096	+		LU632_RS25505	0.83	+0.4
33,096	+		LU632_RS25505	0.83	-0.2
33,096	+		LU632_RS25505	0.83	-1.2
33,096	+		LU632_RS25505	0.83	+0.1
33,096	+		LU632_RS25505	0.83	-0.3
33,096	+		LU632_RS25505	0.83	+0.6
33,096	+		LU632_RS25505	0.83	-0.6
33,096	+		LU632_RS25505	0.83	+2.5
33,097	-		LU632_RS25505	0.83	+1.2
33,097	-		LU632_RS25505	0.83	-2.0
33,097	-		LU632_RS25505	0.83	-1.2
33,097	-		LU632_RS25505	0.83	-0.1
33,097	-		LU632_RS25505	0.83	+0.1
33,097	-		LU632_RS25505	0.83	-3.1
33,097	-		LU632_RS25505	0.83	+1.0
33,149	+				+0.8
33,150	-				-2.0