Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25240

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
4,801,151	+	gspE	LU632_RS25235	0.32	-0.7
4,801,166	+	gspE	LU632_RS25235	0.33	-0.5
4,801,169	+	gspE	LU632_RS25235	0.33	+0.1
4,801,170	-	gspE	LU632_RS25235	0.33	+1.7
4,801,206	-	gspE	LU632_RS25235	0.36	+0.9
4,801,258	+	gspE	LU632_RS25235	0.39	+2.0
4,801,258	+	gspE	LU632_RS25235	0.39	+2.3
4,801,258	+	gspE	LU632_RS25235	0.39	-0.6
4,801,259	-	gspE	LU632_RS25235	0.39	-0.1
4,801,259	-	gspE	LU632_RS25235	0.39	+0.7
4,801,259	-	gspE	LU632_RS25235	0.39	-2.7
4,801,493	+	gspE	LU632_RS25235	0.55	+0.4
4,801,522	-	gspE	LU632_RS25235	0.57	+1.0
4,801,522	-	gspE	LU632_RS25235	0.57	-0.9
4,801,712	+	gspE	LU632_RS25235	0.70	-2.1
4,801,713	-	gspE	LU632_RS25235	0.70	-1.1
4,802,152	+				+0.2
4,802,153	-				-1.9
4,802,154	+				+0.2
4,802,155	-				-0.8
4,802,155	-				+1.9
4,802,155	-				+1.6
4,802,155	-				+0.6
4,802,315	+	gspF	LU632_RS25240	0.14	-0.1
4,802,538	-	gspF	LU632_RS25240	0.33	+0.8
4,802,622	+	gspF	LU632_RS25240	0.40	-1.4
4,802,623	-	gspF	LU632_RS25240	0.40	+0.7
4,802,935	-	gspF	LU632_RS25240	0.66	-2.0
4,802,935	-	gspF	LU632_RS25240	0.66	+0.7
4,803,034	+	gspF	LU632_RS25240	0.74	+1.5
4,803,035	-	gspF	LU632_RS25240	0.74	+1.2
4,803,035	-	gspF	LU632_RS25240	0.74	+1.2
4,803,035	-	gspF	LU632_RS25240	0.74	-0.9
4,803,072	-	gspF	LU632_RS25240	0.77	+0.5
4,803,072	-	gspF	LU632_RS25240	0.77	+1.4
4,803,073	+	gspF	LU632_RS25240	0.77	+1.1
4,803,073	+	gspF	LU632_RS25240	0.77	+3.2
4,803,331	-				-1.3
4,803,333	+				+0.7
4,803,333	+				+1.6
4,803,333	+				-0.2
4,803,333	+				-0.4
4,803,333	+				+1.0
4,803,338	+				+0.2
4,803,351	+				+0.2
4,803,351	+				+0.4
4,803,360	+				+1.8
4,803,361	-				-0.1
4,803,368	-				+0.5
4,803,429	+	gspG	LU632_RS25245	0.14	-0.4
4,803,443	-	gspG	LU632_RS25245	0.17	+0.2
4,803,466	+	gspG	LU632_RS25245	0.22	-1.1
4,803,529	+	gspG	LU632_RS25245	0.36	+1.2
4,803,530	-	gspG	LU632_RS25245	0.36	-0.8
4,803,530	-	gspG	LU632_RS25245	0.36	+3.2
4,803,554	+	gspG	LU632_RS25245	0.42	-2.1
4,803,554	+	gspG	LU632_RS25245	0.42	-1.8
4,803,554	+	gspG	LU632_RS25245	0.42	+1.0
4,803,555	-	gspG	LU632_RS25245	0.42	-1.6
4,803,644	+	gspG	LU632_RS25245	0.62	-2.1
4,803,659	+	gspG	LU632_RS25245	0.66	+0.0
4,803,659	+	gspG	LU632_RS25245	0.66	+1.4
4,803,659	+	gspG	LU632_RS25245	0.66	+1.1
4,803,661	+	gspG	LU632_RS25245	0.66	+0.7
4,803,948	-	gspI	LU632_RS25250	0.34	+1.2
4,803,953	+	gspI	LU632_RS25250	0.35	-0.4
4,803,955	+	gspI	LU632_RS25250	0.36	-1.1
4,803,956	-	gspI	LU632_RS25250	0.36	-0.1
4,803,956	-	gspI	LU632_RS25250	0.36	+0.6
4,803,965	+	gspI	LU632_RS25250	0.38	+3.3
4,804,258	+				-0.9
4,804,287	-	gspJ	LU632_RS25255	0.15	+0.2