Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24635 and LU632_RS24640 overlap by 4 nucleotides LU632_RS24640 and LU632_RS24645 are separated by 136 nucleotides LU632_RS24645 and LU632_RS24650 are separated by 204 nucleotides
LU632_RS24635: LU632_RS24635 - hypothetical protein, at 4,693,808 to 4,694,242
_RS24635
LU632_RS24640: LU632_RS24640 - hypothetical protein, at 4,694,239 to 4,694,943
_RS24640
LU632_RS24645: LU632_RS24645 - IS630 family transposase, at 4,695,080 to 4,695,291
_RS24645
LU632_RS24650: LU632_RS24650 - IS256 family transposase, at 4,695,496 to 4,696,706
_RS24650
Position (kb) 4695
4696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4694.136 kb on + strand, within LU632_RS24635 at 4694.137 kb on - strand, within LU632_RS24635 at 4694.137 kb on - strand, within LU632_RS24635 at 4694.139 kb on + strand, within LU632_RS24635 at 4694.140 kb on - strand, within LU632_RS24635 at 4694.169 kb on + strand, within LU632_RS24635 at 4694.170 kb on - strand, within LU632_RS24635 at 4694.216 kb on + strand at 4694.217 kb on - strand at 4694.217 kb on - strand at 4694.273 kb on - strand at 4694.338 kb on + strand, within LU632_RS24640 at 4694.339 kb on - strand, within LU632_RS24640 at 4694.371 kb on - strand, within LU632_RS24640 at 4694.427 kb on + strand, within LU632_RS24640 at 4694.457 kb on - strand, within LU632_RS24640 at 4694.459 kb on + strand, within LU632_RS24640 at 4694.640 kb on + strand, within LU632_RS24640 at 4694.718 kb on + strand, within LU632_RS24640 at 4694.719 kb on - strand, within LU632_RS24640 at 4694.762 kb on + strand, within LU632_RS24640 at 4694.763 kb on - strand, within LU632_RS24640 at 4694.774 kb on + strand, within LU632_RS24640 at 4694.774 kb on + strand, within LU632_RS24640 at 4694.774 kb on + strand, within LU632_RS24640 at 4694.816 kb on - strand, within LU632_RS24640 at 4694.877 kb on + strand at 4694.877 kb on + strand at 4694.895 kb on + strand at 4694.895 kb on + strand at 4695.025 kb on + strand at 4695.025 kb on + strand at 4695.026 kb on - strand at 4695.027 kb on + strand at 4695.027 kb on + strand at 4695.027 kb on + strand at 4695.027 kb on + strand at 4695.027 kb on + strand at 4695.027 kb on + strand at 4695.028 kb on - strand at 4695.028 kb on - strand at 4695.028 kb on - strand at 4695.030 kb on + strand at 4695.030 kb on + strand at 4695.030 kb on + strand at 4695.031 kb on - strand at 4695.031 kb on - strand at 4695.050 kb on + strand at 4695.090 kb on - strand at 4695.090 kb on - strand at 4695.155 kb on - strand, within LU632_RS24645 at 4695.260 kb on - strand, within LU632_RS24645 at 4695.356 kb on + strand at 4695.388 kb on - strand at 4695.394 kb on - strand at 4695.394 kb on - strand at 4695.394 kb on - strand at 4695.394 kb on - strand at 4695.433 kb on - strand at 4695.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 4,694,136 + LU632_RS24635 0.75 +0.2 4,694,137 - LU632_RS24635 0.76 -0.5 4,694,137 - LU632_RS24635 0.76 -1.1 4,694,139 + LU632_RS24635 0.76 -1.6 4,694,140 - LU632_RS24635 0.76 +0.6 4,694,169 + LU632_RS24635 0.83 +0.0 4,694,170 - LU632_RS24635 0.83 -0.5 4,694,216 + +4.3 4,694,217 - -0.9 4,694,217 - -0.8 4,694,273 - +0.7 4,694,338 + LU632_RS24640 0.14 +0.2 4,694,339 - LU632_RS24640 0.14 -0.8 4,694,371 - LU632_RS24640 0.19 -3.3 4,694,427 + LU632_RS24640 0.27 +0.2 4,694,457 - LU632_RS24640 0.31 +1.0 4,694,459 + LU632_RS24640 0.31 +1.2 4,694,640 + LU632_RS24640 0.57 -1.8 4,694,718 + LU632_RS24640 0.68 +1.2 4,694,719 - LU632_RS24640 0.68 +1.2 4,694,762 + LU632_RS24640 0.74 -1.1 4,694,763 - LU632_RS24640 0.74 -1.2 4,694,774 + LU632_RS24640 0.76 -0.4 4,694,774 + LU632_RS24640 0.76 +1.4 4,694,774 + LU632_RS24640 0.76 +0.2 4,694,816 - LU632_RS24640 0.82 +0.7 4,694,877 + -2.0 4,694,877 + +1.2 4,694,895 + +0.0 4,694,895 + -0.4 4,695,025 + -3.1 4,695,025 + -2.7 4,695,026 - -1.0 4,695,027 + +3.1 4,695,027 + -1.7 4,695,027 + +0.9 4,695,027 + -1.8 4,695,027 + -1.1 4,695,027 + -1.4 4,695,028 - +0.8 4,695,028 - -1.6 4,695,028 - +1.4 4,695,030 + -1.8 4,695,030 + -1.1 4,695,030 + +1.2 4,695,031 - +1.0 4,695,031 - +1.2 4,695,050 + +2.3 4,695,090 - +0.4 4,695,090 - +1.1 4,695,155 - LU632_RS24645 0.35 -1.3 4,695,260 - LU632_RS24645 0.85 -2.0 4,695,356 + +0.4 4,695,388 - +1.1 4,695,394 - -0.9 4,695,394 - -0.2 4,695,394 - +2.3 4,695,394 - +1.6 4,695,433 - -0.3 4,695,447 - +0.3
Or see this region's nucleotide sequence