Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt envZ and ompR overlap by 4 nucleotides ompR and LU632_RS22945 are separated by 72 nucleotides LU632_RS22945 and greB are separated by 14 nucleotides greB and LU632_RS22955 are separated by 93 nucleotides
LU632_RS22935: envZ - two-component system sensor histidine kinase EnvZ, at 4,369,533 to 4,370,885
envZ
LU632_RS22940: ompR - two-component system response regulator OmpR, at 4,370,882 to 4,371,601
ompR
LU632_RS22945: LU632_RS22945 - hypothetical protein, at 4,371,674 to 4,371,889
_RS22945
LU632_RS22950: greB - transcription elongation factor GreB, at 4,371,904 to 4,372,383
greB
LU632_RS22955: LU632_RS22955 - RNA-binding transcriptional accessory protein, at 4,372,477 to 4,374,795
_RS22955
Position (kb) 4370
4371
4372 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4369.943 kb on - strand, within envZ at 4370.004 kb on + strand, within envZ at 4370.004 kb on + strand, within envZ at 4370.005 kb on - strand, within envZ at 4370.005 kb on - strand, within envZ at 4370.005 kb on - strand, within envZ at 4370.005 kb on - strand, within envZ at 4370.026 kb on + strand, within envZ at 4370.027 kb on - strand, within envZ at 4370.076 kb on - strand, within envZ at 4370.248 kb on - strand, within envZ at 4370.248 kb on - strand, within envZ at 4370.285 kb on + strand, within envZ at 4370.286 kb on - strand, within envZ at 4370.294 kb on + strand, within envZ at 4370.396 kb on + strand, within envZ at 4370.396 kb on + strand, within envZ at 4370.396 kb on + strand, within envZ at 4370.396 kb on + strand, within envZ at 4370.397 kb on - strand, within envZ at 4370.397 kb on - strand, within envZ at 4370.397 kb on - strand, within envZ at 4370.397 kb on - strand, within envZ at 4370.573 kb on - strand, within envZ at 4370.714 kb on + strand, within envZ at 4370.714 kb on + strand, within envZ at 4370.715 kb on - strand, within envZ at 4370.715 kb on - strand, within envZ at 4370.721 kb on - strand, within envZ at 4370.744 kb on + strand, within envZ at 4370.794 kb on + strand at 4370.794 kb on + strand at 4370.795 kb on - strand at 4370.828 kb on + strand at 4370.828 kb on + strand at 4370.829 kb on - strand at 4370.829 kb on - strand at 4370.940 kb on + strand at 4370.941 kb on - strand at 4371.021 kb on + strand, within ompR at 4371.022 kb on - strand, within ompR at 4371.178 kb on + strand, within ompR at 4371.295 kb on + strand, within ompR at 4371.295 kb on + strand, within ompR at 4371.295 kb on - strand, within ompR at 4371.297 kb on + strand, within ompR at 4371.297 kb on + strand, within ompR at 4371.298 kb on - strand, within ompR at 4371.362 kb on - strand, within ompR at 4371.365 kb on + strand, within ompR at 4371.406 kb on + strand, within ompR at 4371.407 kb on - strand, within ompR at 4371.407 kb on - strand, within ompR at 4371.410 kb on + strand, within ompR at 4371.662 kb on + strand at 4371.662 kb on + strand at 4371.680 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.683 kb on - strand at 4371.747 kb on + strand, within LU632_RS22945 at 4371.878 kb on - strand at 4371.913 kb on - strand at 4372.046 kb on - strand, within greB at 4372.051 kb on + strand, within greB at 4372.051 kb on + strand, within greB at 4372.052 kb on - strand, within greB at 4372.052 kb on - strand, within greB at 4372.093 kb on + strand, within greB at 4372.094 kb on - strand, within greB at 4372.132 kb on + strand, within greB at 4372.246 kb on - strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.323 kb on + strand, within greB at 4372.348 kb on + strand at 4372.349 kb on - strand at 4372.392 kb on + strand at 4372.393 kb on - strand at 4372.443 kb on + strand at 4372.443 kb on + strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.471 kb on + strand at 4372.471 kb on + strand at 4372.504 kb on - strand at 4372.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 4,369,943 - envZ LU632_RS22935 0.30 -1.6 4,370,004 + envZ LU632_RS22935 0.35 -0.5 4,370,004 + envZ LU632_RS22935 0.35 +1.1 4,370,005 - envZ LU632_RS22935 0.35 +0.1 4,370,005 - envZ LU632_RS22935 0.35 -0.9 4,370,005 - envZ LU632_RS22935 0.35 -5.1 4,370,005 - envZ LU632_RS22935 0.35 -1.4 4,370,026 + envZ LU632_RS22935 0.36 +1.1 4,370,027 - envZ LU632_RS22935 0.37 +0.1 4,370,076 - envZ LU632_RS22935 0.40 +1.1 4,370,248 - envZ LU632_RS22935 0.53 -1.7 4,370,248 - envZ LU632_RS22935 0.53 +1.1 4,370,285 + envZ LU632_RS22935 0.56 -4.2 4,370,286 - envZ LU632_RS22935 0.56 -1.7 4,370,294 + envZ LU632_RS22935 0.56 +1.1 4,370,396 + envZ LU632_RS22935 0.64 +0.1 4,370,396 + envZ LU632_RS22935 0.64 -1.2 4,370,396 + envZ LU632_RS22935 0.64 -2.1 4,370,396 + envZ LU632_RS22935 0.64 -2.8 4,370,397 - envZ LU632_RS22935 0.64 -2.6 4,370,397 - envZ LU632_RS22935 0.64 -1.2 4,370,397 - envZ LU632_RS22935 0.64 -2.0 4,370,397 - envZ LU632_RS22935 0.64 -2.0 4,370,573 - envZ LU632_RS22935 0.77 -0.5 4,370,714 + envZ LU632_RS22935 0.87 -0.5 4,370,714 + envZ LU632_RS22935 0.87 -2.6 4,370,715 - envZ LU632_RS22935 0.87 +1.1 4,370,715 - envZ LU632_RS22935 0.87 -0.9 4,370,721 - envZ LU632_RS22935 0.88 +1.1 4,370,744 + envZ LU632_RS22935 0.90 -1.2 4,370,794 + -2.6 4,370,794 + +1.1 4,370,795 - -2.5 4,370,828 + -0.5 4,370,828 + -1.5 4,370,829 - -2.3 4,370,829 - -2.1 4,370,940 + -2.2 4,370,941 - +1.1 4,371,021 + ompR LU632_RS22940 0.19 -0.9 4,371,022 - ompR LU632_RS22940 0.19 -1.9 4,371,178 + ompR LU632_RS22940 0.41 -2.6 4,371,295 + ompR LU632_RS22940 0.57 +0.1 4,371,295 + ompR LU632_RS22940 0.57 -1.9 4,371,295 - ompR LU632_RS22940 0.57 -2.2 4,371,297 + ompR LU632_RS22940 0.58 -0.5 4,371,297 + ompR LU632_RS22940 0.58 -0.2 4,371,298 - ompR LU632_RS22940 0.58 -0.9 4,371,362 - ompR LU632_RS22940 0.67 -2.9 4,371,365 + ompR LU632_RS22940 0.67 -0.9 4,371,406 + ompR LU632_RS22940 0.73 -2.1 4,371,407 - ompR LU632_RS22940 0.73 +0.1 4,371,407 - ompR LU632_RS22940 0.73 -1.9 4,371,410 + ompR LU632_RS22940 0.73 -2.9 4,371,662 + +0.1 4,371,662 + -0.5 4,371,680 + +0.1 4,371,682 + -1.7 4,371,682 + +1.8 4,371,682 + +1.4 4,371,682 + +0.4 4,371,683 - -2.3 4,371,747 + LU632_RS22945 0.34 +0.0 4,371,878 - +2.3 4,371,913 - -1.2 4,372,046 - greB LU632_RS22950 0.30 +0.6 4,372,051 + greB LU632_RS22950 0.31 -1.1 4,372,051 + greB LU632_RS22950 0.31 +1.1 4,372,052 - greB LU632_RS22950 0.31 +0.5 4,372,052 - greB LU632_RS22950 0.31 -0.2 4,372,093 + greB LU632_RS22950 0.39 -1.5 4,372,094 - greB LU632_RS22950 0.40 +0.5 4,372,132 + greB LU632_RS22950 0.47 +1.2 4,372,246 - greB LU632_RS22950 0.71 -0.5 4,372,252 + greB LU632_RS22950 0.72 -2.1 4,372,252 + greB LU632_RS22950 0.72 +1.0 4,372,252 + greB LU632_RS22950 0.72 -1.9 4,372,310 + greB LU632_RS22950 0.85 -0.5 4,372,310 + greB LU632_RS22950 0.85 -0.8 4,372,310 + greB LU632_RS22950 0.85 +0.9 4,372,311 - greB LU632_RS22950 0.85 -0.1 4,372,311 - greB LU632_RS22950 0.85 -1.2 4,372,311 - greB LU632_RS22950 0.85 -0.5 4,372,311 - greB LU632_RS22950 0.85 +0.2 4,372,311 - greB LU632_RS22950 0.85 +2.0 4,372,311 - greB LU632_RS22950 0.85 -0.5 4,372,323 + greB LU632_RS22950 0.87 +0.7 4,372,348 + +0.7 4,372,349 - +1.5 4,372,392 + +1.0 4,372,393 - -2.1 4,372,443 + +0.2 4,372,443 + +0.1 4,372,444 - -2.2 4,372,444 - -1.3 4,372,444 - +0.1 4,372,471 + -1.4 4,372,471 + -1.9 4,372,504 - -1.9 4,372,599 + -1.2
Or see this region's nucleotide sequence