Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fkpA and LU632_RS22720 are separated by 286 nucleotides LU632_RS22720 and slyD are separated by 130 nucleotides slyD and LU632_RS22730 are separated by 136 nucleotides LU632_RS22730 and kefB are separated by 8 nucleotides
LU632_RS22715: fkpA - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,324,632 to 4,325,471
fkpA
LU632_RS22720: LU632_RS22720 - SlyX family protein, at 4,325,758 to 4,325,973
_RS22720
LU632_RS22725: slyD - peptidylprolyl isomerase, at 4,326,104 to 4,326,625
slyD
LU632_RS22730: LU632_RS22730 - YheV family putative metal-binding protein, at 4,326,762 to 4,326,956
_RS22730
LU632_RS22735: kefB - glutathione-regulated potassium-efflux system protein KefB, at 4,326,965 to 4,328,770
kefB
Position (kb) 4325
4326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4324.802 kb on + strand, within fkpA at 4324.901 kb on + strand, within fkpA at 4324.934 kb on + strand, within fkpA at 4324.936 kb on + strand, within fkpA at 4324.940 kb on + strand, within fkpA at 4324.941 kb on - strand, within fkpA at 4324.944 kb on + strand, within fkpA at 4324.945 kb on - strand, within fkpA at 4325.272 kb on + strand, within fkpA at 4325.272 kb on + strand, within fkpA at 4325.451 kb on - strand at 4325.529 kb on + strand at 4325.581 kb on + strand at 4325.581 kb on + strand at 4325.650 kb on - strand at 4325.686 kb on - strand at 4325.847 kb on + strand, within LU632_RS22720 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.848 kb on - strand, within LU632_RS22720 at 4325.888 kb on + strand, within LU632_RS22720 at 4325.968 kb on + strand at 4325.969 kb on - strand at 4325.972 kb on - strand at 4325.972 kb on - strand at 4326.016 kb on - strand at 4326.236 kb on - strand, within slyD at 4326.236 kb on - strand, within slyD at 4326.299 kb on + strand, within slyD at 4326.423 kb on + strand, within slyD at 4326.497 kb on + strand, within slyD at 4326.498 kb on - strand, within slyD at 4326.543 kb on - strand, within slyD at 4326.577 kb on + strand at 4326.589 kb on - strand at 4326.629 kb on + strand at 4326.630 kb on - strand at 4326.730 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) remove 4,324,802 + fkpA LU632_RS22715 0.20 +0.8 4,324,901 + fkpA LU632_RS22715 0.32 -0.9 4,324,934 + fkpA LU632_RS22715 0.36 -3.3 4,324,936 + fkpA LU632_RS22715 0.36 +2.6 4,324,940 + fkpA LU632_RS22715 0.37 +1.1 4,324,941 - fkpA LU632_RS22715 0.37 -0.5 4,324,944 + fkpA LU632_RS22715 0.37 +1.6 4,324,945 - fkpA LU632_RS22715 0.37 +3.1 4,325,272 + fkpA LU632_RS22715 0.76 -1.1 4,325,272 + fkpA LU632_RS22715 0.76 +0.1 4,325,451 - +0.8 4,325,529 + +0.3 4,325,581 + -1.5 4,325,581 + +0.6 4,325,650 - -0.5 4,325,686 - -1.2 4,325,847 + LU632_RS22720 0.41 -0.1 4,325,847 + LU632_RS22720 0.41 -1.7 4,325,847 + LU632_RS22720 0.41 -2.1 4,325,848 - LU632_RS22720 0.42 +0.1 4,325,888 + LU632_RS22720 0.60 -0.3 4,325,968 + +1.3 4,325,969 - -0.5 4,325,972 - +0.0 4,325,972 - +0.6 4,326,016 - -2.1 4,326,236 - slyD LU632_RS22725 0.25 -3.1 4,326,236 - slyD LU632_RS22725 0.25 -0.5 4,326,299 + slyD LU632_RS22725 0.37 -2.5 4,326,423 + slyD LU632_RS22725 0.61 +0.7 4,326,497 + slyD LU632_RS22725 0.75 -2.1 4,326,498 - slyD LU632_RS22725 0.75 -0.4 4,326,543 - slyD LU632_RS22725 0.84 +0.0 4,326,577 + -1.5 4,326,589 - -1.7 4,326,629 + +0.4 4,326,630 - -1.2 4,326,730 - +0.3
Or see this region's nucleotide sequence