Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21955

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
4,194,060	+	rfaQ	LU632_RS21950	0.14	+0.0
4,194,062	+	rfaQ	LU632_RS21950	0.14	-0.4
4,194,156	-	rfaQ	LU632_RS21950	0.23	+1.5
4,194,201	+	rfaQ	LU632_RS21950	0.27	-2.1
4,194,304	+	rfaQ	LU632_RS21950	0.37	+2.4
4,194,365	+	rfaQ	LU632_RS21950	0.42	+1.5
4,194,370	+	rfaQ	LU632_RS21950	0.43	-2.1
4,194,438	+	rfaQ	LU632_RS21950	0.49	-2.6
4,194,488	+	rfaQ	LU632_RS21950	0.53	-1.7
4,194,488	+	rfaQ	LU632_RS21950	0.53	-0.5
4,194,488	+	rfaQ	LU632_RS21950	0.53	-2.2
4,194,488	+	rfaQ	LU632_RS21950	0.53	-0.5
4,194,488	+	rfaQ	LU632_RS21950	0.53	-0.5
4,194,489	-	rfaQ	LU632_RS21950	0.54	-1.7
4,194,489	-	rfaQ	LU632_RS21950	0.54	+1.3
4,194,506	+	rfaQ	LU632_RS21950	0.55	-0.5
4,194,555	-	rfaQ	LU632_RS21950	0.60	-2.6
4,194,790	+	rfaQ	LU632_RS21950	0.81	-1.2
4,194,882	+	rfaQ	LU632_RS21950	0.90	-0.4
4,195,053	+				+0.1
4,195,264	-		LU632_RS21955	0.24	-1.5
4,195,615	+		LU632_RS21955	0.55	-2.9
4,195,616	-		LU632_RS21955	0.55	-2.1
4,196,096	-				-0.9
4,196,105	+				+1.5
4,196,106	-				-0.9
4,196,126	+				+1.0
4,196,126	+				-2.8
4,196,127	-				-1.6
4,196,145	+				-2.2
4,196,152	+				-0.3