Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21235

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
4,054,326	+				+0.3
4,054,421	+	mlaB	LU632_RS21225	0.11	-3.5
4,054,452	+	mlaB	LU632_RS21225	0.22	+0.4
4,054,502	-	mlaB	LU632_RS21225	0.39	-1.7
4,054,582	-	mlaB	LU632_RS21225	0.66	-0.9
4,054,582	-	mlaB	LU632_RS21225	0.66	-3.5
4,054,582	-	mlaB	LU632_RS21225	0.66	+1.1
4,054,606	+	mlaB	LU632_RS21225	0.74	-3.2
4,054,607	-	mlaB	LU632_RS21225	0.74	-1.2
4,054,607	-	mlaB	LU632_RS21225	0.74	-4.4
4,054,609	-	mlaB	LU632_RS21225	0.75	-4.1
4,054,657	+				-0.5
4,054,727	+				-1.9
4,054,728	-				-2.3
4,054,790	+	mlaC	LU632_RS21230	0.17	-2.9
4,054,807	-	mlaC	LU632_RS21230	0.20	+0.1
4,054,823	+	mlaC	LU632_RS21230	0.22	-0.7
4,054,829	-	mlaC	LU632_RS21230	0.23	+0.1
4,054,985	-	mlaC	LU632_RS21230	0.48	-3.7
4,054,985	-	mlaC	LU632_RS21230	0.48	+1.1
4,055,021	-	mlaC	LU632_RS21230	0.53	-2.1
4,055,021	-	mlaC	LU632_RS21230	0.53	-0.2
4,055,036	+	mlaC	LU632_RS21230	0.56	-2.3
4,055,042	-	mlaC	LU632_RS21230	0.57	-2.2
4,055,104	+	mlaC	LU632_RS21230	0.66	-3.5
4,055,104	+	mlaC	LU632_RS21230	0.66	-1.9
4,055,104	+	mlaC	LU632_RS21230	0.66	+0.8
4,055,104	+	mlaC	LU632_RS21230	0.66	-3.3
4,055,105	-	mlaC	LU632_RS21230	0.67	-0.9
4,055,105	-	mlaC	LU632_RS21230	0.67	+0.7
4,055,115	+	mlaC	LU632_RS21230	0.68	-2.1
4,055,230	-	mlaC	LU632_RS21230	0.86	-1.2
4,055,282	+				-0.8
4,055,339	+				-2.3
4,055,339	+				-0.9
4,055,340	-				-0.9
4,055,405	-	mlaD	LU632_RS21235	0.16	-2.8
4,055,407	+	mlaD	LU632_RS21235	0.16	-2.3
4,055,408	-	mlaD	LU632_RS21235	0.16	-2.8
4,055,408	-	mlaD	LU632_RS21235	0.16	-4.2
4,055,424	+	mlaD	LU632_RS21235	0.19	+0.3
4,055,425	-	mlaD	LU632_RS21235	0.19	-2.1
4,055,429	-	mlaD	LU632_RS21235	0.20	-1.5
4,055,467	+	mlaD	LU632_RS21235	0.27	-1.9
4,055,468	-	mlaD	LU632_RS21235	0.27	-1.2
4,055,468	-	mlaD	LU632_RS21235	0.27	-4.6
4,055,615	-	mlaD	LU632_RS21235	0.53	-3.2
4,055,632	+	mlaD	LU632_RS21235	0.56	-1.9
4,055,704	+	mlaD	LU632_RS21235	0.69	-0.5
4,055,705	-	mlaD	LU632_RS21235	0.69	-4.0
4,055,752	-	mlaD	LU632_RS21235	0.77	-2.7
4,055,838	-				+0.1
4,055,850	-				-2.3
4,056,027	+	mlaE	LU632_RS21240	0.18	-3.0
4,056,028	-	mlaE	LU632_RS21240	0.19	-3.2
4,056,071	+	mlaE	LU632_RS21240	0.24	-2.3
4,056,101	+	mlaE	LU632_RS21240	0.28	-2.5
4,056,122	+	mlaE	LU632_RS21240	0.31	-3.1
4,056,166	-	mlaE	LU632_RS21240	0.36	-2.9
4,056,381	+	mlaE	LU632_RS21240	0.64	-1.7
4,056,424	+	mlaE	LU632_RS21240	0.69	-3.0
4,056,425	-	mlaE	LU632_RS21240	0.69	-2.3
4,056,590	+				-1.3
4,056,590	+				+1.1
4,056,620	+				-0.9
4,056,620	+				-2.2
4,056,623	+				-3.8
4,056,675	-				-2.8
4,056,675	-				-0.5
4,056,704	+				-4.5
4,056,775	-	mlaF	LU632_RS21245	0.13	-2.5
4,056,775	-	mlaF	LU632_RS21245	0.13	-2.7
4,056,839	+	mlaF	LU632_RS21245	0.20	-1.2
4,056,840	-	mlaF	LU632_RS21245	0.21	-1.5
4,056,845	+	mlaF	LU632_RS21245	0.21	-0.6
4,056,845	+	mlaF	LU632_RS21245	0.21	-1.1