Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20790
Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS) |
---|---|---|---|---|---|
remove | |||||
3,967,580 | - | LU632_RS20785 | 0.71 | -0.8 | |
3,967,848 | - | LU632_RS20785 | 0.88 | +1.4 | |
3,968,541 | + | LU632_RS20790 | 0.36 | -1.5 | |
3,968,638 | - | LU632_RS20790 | 0.43 | -3.6 | |
3,969,406 | - | +3.1 | |||
3,969,406 | - | -1.6 | |||
3,969,491 | + | LU632_RS20795 | 0.12 | +1.1 | |
3,970,041 | + | LU632_RS20795 | 0.55 | +1.0 | |
3,970,041 | + | LU632_RS20795 | 0.55 | -1.7 |
Or see this region's nucleotide sequence