Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19160

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
3,620,606	+				-0.0
3,620,619	+				-1.5
3,620,620	-				+1.5
3,620,620	-				-0.0
3,620,622	-				-1.4
3,620,622	-				+0.1
3,620,768	+				+3.6
3,620,796	+				+0.1
3,620,845	+		LU632_RS19155	0.12	+0.9
3,620,934	+		LU632_RS19155	0.25	+0.9
3,620,956	+		LU632_RS19155	0.28	+0.5
3,620,956	+		LU632_RS19155	0.28	+1.1
3,620,957	-		LU632_RS19155	0.29	+0.9
3,620,957	-		LU632_RS19155	0.29	+1.9
3,621,033	+		LU632_RS19155	0.40	-2.2
3,621,034	-		LU632_RS19155	0.40	+0.4
3,621,320	+		LU632_RS19155	0.81	-2.2
3,621,402	-				-0.7
3,621,451	+				-0.8
3,622,077	+	gntR	LU632_RS19160	0.53	-1.6
3,622,078	-	gntR	LU632_RS19160	0.53	-1.2
3,622,151	+	gntR	LU632_RS19160	0.60	-1.2
3,622,286	-	gntR	LU632_RS19160	0.74	-2.5
3,622,419	+	gntR	LU632_RS19160	0.87	+0.9
3,622,554	+				-1.4
3,622,554	+				+2.3
3,622,640	+				-1.5
3,622,640	+				+1.3
3,622,728	+				+0.8
3,622,728	+				-1.6
3,622,728	+				+3.5
3,622,728	+				+1.6
3,622,728	+				+1.7
3,622,728	+				+0.7
3,622,728	-				-0.7
3,622,730	-				+0.4
3,622,734	+				+0.5
3,622,734	+				+0.4
3,622,734	+				-1.1
3,622,734	+				-0.2
3,622,735	-				+1.5
3,622,836	+	gntK	LU632_RS19165	0.20	+0.9
3,622,837	-	gntK	LU632_RS19165	0.20	+0.8
3,622,962	+	gntK	LU632_RS19165	0.44	-4.2
3,622,962	+	gntK	LU632_RS19165	0.44	+0.9
3,622,966	-	gntK	LU632_RS19165	0.44	-0.6
3,623,260	+				-1.9
3,623,271	+				-2.7
3,623,271	+				-1.3
3,623,271	+				+1.2
3,623,272	-				+0.9
3,623,272	-				-0.1
3,623,272	-				-0.2
3,623,272	-				-0.8
3,623,272	-				-0.8
3,623,415	+	gntU	LU632_RS19170	0.11	+0.6