Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18420

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
3,481,009	-		LU632_RS18410	0.24	+1.1
3,481,057	+		LU632_RS18410	0.33	-0.1
3,481,057	+		LU632_RS18410	0.33	-0.4
3,481,058	-		LU632_RS18410	0.33	-0.3
3,481,058	-		LU632_RS18410	0.33	+0.9
3,481,062	-		LU632_RS18410	0.34	+0.3
3,481,454	+				-1.6
3,481,456	+				+1.4
3,481,456	+				+1.7
3,481,456	+				-1.3
3,481,456	+				+1.6
3,481,456	+				-3.9
3,481,456	+				+1.3
3,481,457	-				-0.1
3,481,457	-				+0.5
3,481,457	-				-0.9
3,481,457	-				-2.5
3,481,457	-				+1.0
3,481,457	-				+1.9
3,481,458	-				+0.3
3,481,463	+				-0.5
3,481,497	-				-2.9
3,481,535	-		LU632_RS18415	0.15	+2.0
3,481,535	-		LU632_RS18415	0.15	-2.4
3,481,592	+		LU632_RS18415	0.26	-3.4
3,481,593	-		LU632_RS18415	0.27	+0.0
3,481,593	-		LU632_RS18415	0.27	-0.2
3,481,593	-		LU632_RS18415	0.27	-0.0
3,481,593	-		LU632_RS18415	0.27	-3.4
3,481,683	+		LU632_RS18415	0.44	-1.4
3,481,683	+		LU632_RS18415	0.44	+0.7
3,481,684	-		LU632_RS18415	0.45	-1.0
3,481,684	-		LU632_RS18415	0.45	+1.3
3,481,721	+		LU632_RS18415	0.52	+0.1
3,481,946	-				+0.4
3,481,954	+				-1.6
3,481,955	-				-2.2
3,481,979	+				+3.4
3,482,025	-				-2.4
3,482,025	-				-1.6
3,482,025	-				-2.1
3,482,026	+				-2.8
3,482,366	+		LU632_RS18420	0.60	-1.9
3,482,462	-		LU632_RS18420	0.75	-1.3
3,482,593	-				-0.6
3,482,593	-				+0.2
3,482,594	+				-1.1
3,482,594	+				-3.2
3,482,594	+				-0.1
3,482,595	-				+2.5
3,482,637	-				-0.5
3,482,640	+				-4.1
3,482,640	+				-0.6
3,482,640	+				-0.5
3,482,641	-				+5.0
3,482,641	-				+1.4
3,482,641	-				+0.9
3,482,749	+		LU632_RS18425	0.17	-2.5
3,482,750	-		LU632_RS18425	0.17	-1.4
3,482,762	-		LU632_RS18425	0.19	+0.4
3,482,798	+		LU632_RS18425	0.23	+2.3
3,483,330	+				-2.0
3,483,330	-				-1.4
3,483,351	+				-2.2
3,483,351	+				-2.2
3,483,351	+				-0.1
3,483,351	+				-2.8
3,483,352	-				+1.3
3,483,369	+				-1.4
3,483,534	+				+3.2
3,483,535	-				+1.8
3,483,535	-				+2.5
3,483,541	+				+1.6