Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18315

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
3,457,767	+		LU632_RS18305	0.82	-1.6
3,457,772	+		LU632_RS18305	0.83	-2.8
3,457,838	+		LU632_RS18305	0.90	+0.8
3,457,839	-		LU632_RS18305	0.90	-1.4
3,457,839	-		LU632_RS18305	0.90	+3.9
3,457,839	-		LU632_RS18305	0.90	-1.7
3,457,861	+				-2.8
3,457,876	+				-1.6
3,457,876	+				+0.5
3,457,932	+				+1.1
3,457,942	+				-1.6
3,457,942	+				+1.9
3,457,946	+				-0.8
3,457,946	+				+0.2
3,457,946	+				+0.1
3,457,947	-				-0.1
3,457,947	-				-2.5
3,457,952	+				-1.4
3,457,975	+				-0.3
3,457,980	+				+1.9
3,457,999	-				-0.8
3,458,084	-	queC	LU632_RS18310	0.10	+0.4
3,458,093	+	queC	LU632_RS18310	0.12	-0.6
3,458,094	-	queC	LU632_RS18310	0.12	+0.1
3,458,160	+	queC	LU632_RS18310	0.21	+2.4
3,458,184	+	queC	LU632_RS18310	0.25	-0.1
3,458,184	+	queC	LU632_RS18310	0.25	+1.5
3,458,184	+	queC	LU632_RS18310	0.25	+0.9
3,458,184	+	queC	LU632_RS18310	0.25	+1.1
3,458,185	-	queC	LU632_RS18310	0.25	-1.4
3,458,260	+	queC	LU632_RS18310	0.36	+0.0
3,458,261	-	queC	LU632_RS18310	0.36	-0.3
3,458,338	+	queC	LU632_RS18310	0.47	-1.6
3,458,338	+	queC	LU632_RS18310	0.47	-2.2
3,458,338	+	queC	LU632_RS18310	0.47	-0.1
3,458,339	-	queC	LU632_RS18310	0.47	-0.6
3,458,339	-	queC	LU632_RS18310	0.47	+0.2
3,458,428	-	queC	LU632_RS18310	0.60	-0.6
3,458,491	-	queC	LU632_RS18310	0.69	-0.5
3,458,491	-	queC	LU632_RS18310	0.69	+2.1
3,458,491	-	queC	LU632_RS18310	0.69	-1.9
3,458,491	-	queC	LU632_RS18310	0.69	+2.3
3,458,575	+	queC	LU632_RS18310	0.81	+1.0
3,458,586	-	queC	LU632_RS18310	0.83	+0.8
3,458,671	-				-1.0
3,458,731	-				+0.9
3,458,757	+		LU632_RS18315	0.15	-0.9
3,458,887	-		LU632_RS18315	0.48	+0.1
3,458,906	-		LU632_RS18315	0.53	+0.9
3,458,921	+		LU632_RS18315	0.56	+0.6
3,458,925	+		LU632_RS18315	0.57	-0.1
3,458,926	-		LU632_RS18315	0.58	-1.2
3,458,929	-		LU632_RS18315	0.58	-0.1
3,458,931	+		LU632_RS18315	0.59	-0.4
3,458,937	+		LU632_RS18315	0.60	-0.3
3,459,027	-		LU632_RS18315	0.83	-1.1
3,459,079	+				-1.9
3,459,101	+				+0.9
3,459,101	+				+0.1
3,459,101	+				+0.2
3,459,102	-				-0.6
3,459,197	-				-0.0
3,459,231	+				-0.8
3,459,234	+				-1.7
3,459,234	+				-1.0
3,459,256	-		LU632_RS18320	0.14	-0.1
3,459,276	-		LU632_RS18320	0.19	+1.0
3,459,293	-		LU632_RS18320	0.23	-0.1
3,459,305	-		LU632_RS18320	0.26	+0.7
3,459,309	+		LU632_RS18320	0.27	-3.1
3,459,310	-		LU632_RS18320	0.28	-2.6
3,459,310	-		LU632_RS18320	0.28	+3.0
3,459,310	-		LU632_RS18320	0.28	+0.7
3,459,358	-		LU632_RS18320	0.40	-1.4
3,459,387	-		LU632_RS18320	0.47	+2.0
3,459,522	-		LU632_RS18320	0.81	+2.0
3,459,599	-				+0.3
3,459,599	-				+1.5
3,459,602	-				+2.3
3,459,620	-				-0.2
3,459,675	+				+1.0
3,459,864	+				-2.2
3,459,864	+				-2.2
3,459,869	-				+0.4
3,459,869	-				-0.8
3,459,923	+	ppiD	LU632_RS18325	0.11	-2.0