Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16135

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
3,049,718	-	nei	LU632_RS16125	0.76	+2.9
3,049,808	-	nei	LU632_RS16125	0.88	+0.3
3,049,907	+				-3.2
3,049,952	+				-0.6
3,049,952	+				-1.5
3,049,952	+				+1.1
3,049,952	+				+0.9
3,049,952	+				+2.1
3,049,953	-				-1.5
3,049,982	+				-0.7
3,049,982	+				+0.9
3,049,983	-				-2.6
3,049,983	-				-0.3
3,050,077	-				+0.0
3,050,097	-				-0.0
3,050,120	-				-0.1
3,050,120	-				+0.7
3,050,179	-				+0.3
3,050,195	+				-2.8
3,050,336	+		LU632_RS16130	0.33	-0.1
3,050,607	+				-2.8
3,050,608	-				-1.1
3,050,608	-				-0.7
3,050,613	-				-0.7
3,050,613	-				+1.1
3,050,718	-				-2.0
3,050,779	+	pxpA	LU632_RS16135	0.14	-2.7
3,050,854	-	pxpA	LU632_RS16135	0.25	-2.2
3,051,082	+	pxpA	LU632_RS16135	0.55	-2.0
3,051,083	-	pxpA	LU632_RS16135	0.56	-0.7
3,051,427	+				-1.5
3,051,492	+		LU632_RS16140	0.10	-1.8
3,051,493	-		LU632_RS16140	0.11	-0.2
3,051,534	-		LU632_RS16140	0.15	+0.4
3,051,569	+		LU632_RS16140	0.19	-0.7
3,051,757	+		LU632_RS16140	0.39	-0.7
3,051,758	-		LU632_RS16140	0.39	+2.1
3,051,789	-		LU632_RS16140	0.42	-2.7
3,051,999	-		LU632_RS16140	0.64	+2.6
3,052,167	+		LU632_RS16140	0.82	-1.7
3,052,381	+				+0.7