Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16105

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
3,043,753	+				-1.2
3,043,754	-				-2.6
3,043,775	-				-1.8
3,043,775	-				-0.9
3,043,775	-				-2.3
3,043,825	-				-4.5
3,043,890	-				-2.3
3,043,921	-				-2.7
3,043,921	-				-2.2
3,043,974	+				-1.2
3,043,989	-				-4.3
3,044,031	+		LU632_RS16100	0.10	+0.8
3,044,031	+		LU632_RS16100	0.10	-1.5
3,044,031	+		LU632_RS16100	0.10	-3.6
3,044,032	-		LU632_RS16100	0.10	+0.8
3,044,229	-		LU632_RS16100	0.38	-4.3
3,044,236	+		LU632_RS16100	0.39	-2.0
3,044,236	+		LU632_RS16100	0.39	-1.7
3,044,237	-		LU632_RS16100	0.39	-2.7
3,044,238	+		LU632_RS16100	0.39	-3.1
3,044,478	-		LU632_RS16100	0.72	-3.6
3,044,634	+				-4.1
3,044,696	-				-1.0
3,044,698	+				-0.7
3,044,699	-				-2.7
3,044,736	-				-2.6
3,044,749	-				-3.8
3,044,931	-	sdhA	LU632_RS16105	0.13	-1.7
3,045,232	-	sdhA	LU632_RS16105	0.30	-4.2
3,045,395	+	sdhA	LU632_RS16105	0.40	+1.8
3,045,395	+	sdhA	LU632_RS16105	0.40	-2.0
3,045,395	+	sdhA	LU632_RS16105	0.40	-2.2
3,045,396	-	sdhA	LU632_RS16105	0.40	-5.3
3,045,396	-	sdhA	LU632_RS16105	0.40	-0.2
3,045,396	-	sdhA	LU632_RS16105	0.40	-0.7
3,045,397	+	sdhA	LU632_RS16105	0.40	-1.5
3,045,398	-	sdhA	LU632_RS16105	0.40	-4.1
3,045,398	-	sdhA	LU632_RS16105	0.40	-1.7
3,045,398	-	sdhA	LU632_RS16105	0.40	-3.7
3,045,398	-	sdhA	LU632_RS16105	0.40	-0.2
3,045,398	-	sdhA	LU632_RS16105	0.40	-2.3
3,045,673	+	sdhA	LU632_RS16105	0.55	-1.5
3,045,768	+	sdhA	LU632_RS16105	0.61	-3.2
3,045,813	-	sdhA	LU632_RS16105	0.63	-2.2
3,045,881	+	sdhA	LU632_RS16105	0.67	-0.7
3,046,013	-	sdhA	LU632_RS16105	0.75	-0.7
3,046,118	-	sdhA	LU632_RS16105	0.81	+0.8
3,046,118	-	sdhA	LU632_RS16105	0.81	-5.4
3,046,118	-	sdhA	LU632_RS16105	0.81	+0.8
3,046,158	-	sdhA	LU632_RS16105	0.83	-3.1
3,046,158	-	sdhA	LU632_RS16105	0.83	-0.7
3,046,194	-	sdhA	LU632_RS16105	0.85	-5.4
3,046,194	-	sdhA	LU632_RS16105	0.85	-3.1
3,046,199	+	sdhA	LU632_RS16105	0.85	-4.7
3,046,199	+	sdhA	LU632_RS16105	0.85	-6.7
3,046,200	-	sdhA	LU632_RS16105	0.85	-1.5
3,046,200	-	sdhA	LU632_RS16105	0.85	-2.0
3,046,200	-	sdhA	LU632_RS16105	0.85	+0.8
3,046,201	+	sdhA	LU632_RS16105	0.85	-1.5
3,046,248	-	sdhA	LU632_RS16105	0.88	-2.2
3,046,252	+	sdhA	LU632_RS16105	0.88	-2.6
3,046,252	+	sdhA	LU632_RS16105	0.88	-2.6
3,046,482	+				-2.6
3,046,483	-				-3.7
3,046,483	-				-3.9
3,046,505	-	sdhD	LU632_RS16110	0.12	-0.2
3,046,563	-	sdhD	LU632_RS16110	0.29	-1.2
3,046,574	-	sdhD	LU632_RS16110	0.32	-1.7
3,046,574	-	sdhD	LU632_RS16110	0.32	-4.4
3,046,634	-	sdhD	LU632_RS16110	0.49	-3.3
3,046,638	+	sdhD	LU632_RS16110	0.51	-3.0
3,046,672	-	sdhD	LU632_RS16110	0.60	-3.7
3,046,681	-	sdhD	LU632_RS16110	0.63	-3.6
3,046,715	+	sdhD	LU632_RS16110	0.73	-3.3
3,046,715	+	sdhD	LU632_RS16110	0.73	-2.9
3,046,716	-	sdhD	LU632_RS16110	0.73	-1.7
3,046,724	+	sdhD	LU632_RS16110	0.75	-2.7
3,046,724	+	sdhD	LU632_RS16110	0.75	-5.8
3,046,724	+	sdhD	LU632_RS16110	0.75	-5.5
3,046,725	-	sdhD	LU632_RS16110	0.76	-3.1
3,046,726	+	sdhD	LU632_RS16110	0.76	-2.6
3,046,726	+	sdhD	LU632_RS16110	0.76	-0.7
3,046,726	+	sdhD	LU632_RS16110	0.76	-4.4
3,046,727	-	sdhD	LU632_RS16110	0.76	-2.2
3,046,805	-				-1.7
3,046,927	-	sdhC	LU632_RS16115	0.32	-2.2
3,046,982	+	sdhC	LU632_RS16115	0.46	-2.6
3,046,988	+	sdhC	LU632_RS16115	0.47	+0.9
3,046,989	-	sdhC	LU632_RS16115	0.48	-4.2
3,047,064	+	sdhC	LU632_RS16115	0.67	-5.7
3,047,064	+	sdhC	LU632_RS16115	0.67	-3.0
3,047,065	-	sdhC	LU632_RS16115	0.67	-2.3
3,047,065	-	sdhC	LU632_RS16115	0.67	-1.7
3,047,065	-	sdhC	LU632_RS16115	0.67	-4.9
3,047,098	-	sdhC	LU632_RS16115	0.76	-6.1
3,047,098	-	sdhC	LU632_RS16115	0.76	-3.5
3,047,247	-				-3.7
3,047,248	+				-3.8
3,047,266	-				-4.3