Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15610

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
2,958,665	+		LU632_RS15605	0.35	-2.0
2,958,666	-		LU632_RS15605	0.35	+2.9
2,958,666	-		LU632_RS15605	0.35	+0.8
2,958,706	+		LU632_RS15605	0.39	+0.3
2,958,707	-		LU632_RS15605	0.39	-0.8
2,958,872	-		LU632_RS15605	0.54	+0.3
2,958,906	-		LU632_RS15605	0.58	-0.7
2,958,963	+		LU632_RS15605	0.63	+0.3
2,959,137	+		LU632_RS15605	0.79	-2.2
2,959,139	+		LU632_RS15605	0.80	+0.4
2,959,139	+		LU632_RS15605	0.80	+1.2
2,959,140	-		LU632_RS15605	0.80	-2.0
2,959,140	-		LU632_RS15605	0.80	-0.1
2,959,140	-		LU632_RS15605	0.80	+0.6
2,959,140	-		LU632_RS15605	0.80	-2.8
2,959,140	-		LU632_RS15605	0.80	-1.1
2,959,158	-		LU632_RS15605	0.81	-0.3
2,959,242	+		LU632_RS15605	0.89	-0.3
2,959,283	+				-1.8
2,959,283	+				-0.9
2,959,284	-				-0.8
2,959,355	+				-2.4
2,959,610	+		LU632_RS15610	0.25	-1.7
2,959,664	+		LU632_RS15610	0.31	+1.3
2,959,665	-		LU632_RS15610	0.31	-1.6
2,959,665	-		LU632_RS15610	0.31	-0.8
2,959,818	+		LU632_RS15610	0.47	-1.4
2,959,818	+		LU632_RS15610	0.47	+0.5
2,959,819	-		LU632_RS15610	0.47	+0.2
2,959,819	-		LU632_RS15610	0.47	-0.7
2,959,819	-		LU632_RS15610	0.47	-2.0
2,959,819	-		LU632_RS15610	0.47	+0.4
2,959,840	-		LU632_RS15610	0.49	-2.0
2,959,907	+		LU632_RS15610	0.56	+0.2
2,959,944	-		LU632_RS15610	0.60	-0.2
2,959,944	-		LU632_RS15610	0.60	-0.5
2,959,961	+		LU632_RS15610	0.62	-2.1
2,960,069	+		LU632_RS15610	0.73	+1.2
2,960,069	+		LU632_RS15610	0.73	-1.1
2,960,069	+		LU632_RS15610	0.73	-1.8
2,960,070	-		LU632_RS15610	0.73	-3.7
2,960,070	-		LU632_RS15610	0.73	-3.3
2,960,187	+		LU632_RS15610	0.85	+1.3
2,960,189	+		LU632_RS15610	0.85	+1.8
2,960,209	-		LU632_RS15610	0.87	+3.6
2,960,285	-				-3.5
2,960,439	+		LU632_RS15615	0.15	-1.3
2,960,566	-		LU632_RS15615	0.33	+0.8
2,960,789	+		LU632_RS15615	0.63	-2.8
2,960,789	+		LU632_RS15615	0.63	-2.5
2,960,813	+		LU632_RS15615	0.67	+0.3
2,960,842	+		LU632_RS15615	0.71	-0.2
2,960,860	-		LU632_RS15615	0.73	+0.3
2,960,896	+		LU632_RS15615	0.78	-0.4
2,960,950	+		LU632_RS15615	0.85	+1.8
2,960,960	+		LU632_RS15615	0.87	+1.2