Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13745

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
2,628,731	-	putA	LU632_RS13740	0.79	-0.3
2,628,773	-	putA	LU632_RS13740	0.80	-0.1
2,628,796	-	putA	LU632_RS13740	0.81	-1.3
2,628,825	-	putA	LU632_RS13740	0.81	+1.1
2,628,825	-	putA	LU632_RS13740	0.81	+0.3
2,629,005	+	putA	LU632_RS13740	0.86	-1.6
2,629,005	+	putA	LU632_RS13740	0.86	-1.3
2,629,005	+	putA	LU632_RS13740	0.86	+2.7
2,629,006	-	putA	LU632_RS13740	0.86	+0.7
2,629,153	+	putA	LU632_RS13740	0.90	+3.4
2,629,160	+	putA	LU632_RS13740	0.90	+1.3
2,629,160	+	putA	LU632_RS13740	0.90	-0.1
2,629,161	-	putA	LU632_RS13740	0.90	+0.7
2,629,324	+				-2.7
2,629,324	+				-1.8
2,629,324	+				-1.5
2,629,324	+				-1.6
2,629,325	-				-1.7
2,629,325	-				-2.6
2,629,347	+				+0.7
2,629,348	-				-0.6
2,629,405	-				-0.1
2,629,405	-				-1.3
2,629,641	+				-0.8
2,629,641	+				-2.1
2,629,642	-				+1.4
2,629,643	+				-2.1
2,629,644	-				-0.8
2,629,644	-				-1.8
2,629,644	-				+2.3
2,629,696	+				+1.4
2,629,745	+				-0.5
2,629,746	-				+0.4
2,629,746	-				+0.9
2,629,746	-				-0.8
2,629,746	-				+0.4
2,629,750	-				-2.1
2,629,751	+				-0.8
2,629,752	-				+0.3
2,629,752	-				+0.1
2,629,767	-				+0.5
2,629,771	+				+0.1
2,629,771	+				+0.7
2,629,798	+				-4.0
2,629,799	-				-0.0
2,629,799	-				-0.8
2,629,799	-				-1.6
2,629,799	-				-2.6
2,629,799	-				+0.2
2,629,800	+				-0.7
2,629,800	+				-2.4
2,629,801	-				-0.9
2,629,851	-				-0.7
2,629,899	+				+0.7
2,629,899	+				-0.8
2,629,899	+				-1.6
2,629,900	-				-1.7
2,629,935	+				-0.3
2,629,962	+				+0.3
2,630,131	+				-0.3
2,630,131	+				+1.1
2,630,132	-				-2.6
2,630,132	-				-0.7
2,630,133	+				-1.4
2,630,133	+				+2.1
2,630,278	+				-1.3
2,630,279	-				+0.7
2,630,279	-				+0.6
2,630,279	-				-1.2
2,630,298	+				+0.6
2,630,303	+				-0.4
2,630,304	-				-1.6
2,630,304	-				+0.2
2,630,429	+		LU632_RS13745	0.11	+0.2
2,630,429	+		LU632_RS13745	0.11	-3.8
2,630,429	+		LU632_RS13745	0.11	+0.2
2,630,429	+		LU632_RS13745	0.11	+0.2
2,630,429	+		LU632_RS13745	0.11	+1.7
2,630,430	-		LU632_RS13745	0.11	-0.0
2,630,430	-		LU632_RS13745	0.11	+1.7
2,630,430	-		LU632_RS13745	0.11	+0.7
2,630,430	-		LU632_RS13745	0.11	+1.4
2,630,430	-		LU632_RS13745	0.11	-2.3
2,630,434	+		LU632_RS13745	0.11	-1.3
2,630,434	+		LU632_RS13745	0.11	-0.4
2,630,434	+		LU632_RS13745	0.11	-2.6
2,630,435	-		LU632_RS13745	0.11	-1.3
2,630,464	-		LU632_RS13745	0.11	-0.6
2,630,465	+		LU632_RS13745	0.11	+0.7
2,630,465	+		LU632_RS13745	0.11	-3.0
2,630,466	-		LU632_RS13745	0.11	+1.7
2,630,466	-		LU632_RS13745	0.11	-2.2
2,630,480	+		LU632_RS13745	0.11	+1.2
2,630,481	-		LU632_RS13745	0.12	-0.4
2,630,501	+		LU632_RS13745	0.12	-2.3
2,630,502	-		LU632_RS13745	0.12	+1.7
2,630,502	-		LU632_RS13745	0.12	-1.1
2,630,502	-		LU632_RS13745	0.12	+0.5
2,630,504	+		LU632_RS13745	0.12	+1.2
2,630,505	-		LU632_RS13745	0.12	-0.8
2,630,598	+		LU632_RS13745	0.13	-0.8
2,630,598	+		LU632_RS13745	0.13	-2.1
2,630,599	-		LU632_RS13745	0.13	+2.5
2,630,599	-		LU632_RS13745	0.13	-1.8
2,630,599	-		LU632_RS13745	0.13	+0.4
2,630,601	+		LU632_RS13745	0.13	-0.9
2,630,706	+		LU632_RS13745	0.15	-2.6
2,630,736	-		LU632_RS13745	0.15	-0.0
2,630,736	-		LU632_RS13745	0.15	-1.3
2,630,736	-		LU632_RS13745	0.15	-1.1
2,630,736	-		LU632_RS13745	0.15	-1.4
2,630,736	-		LU632_RS13745	0.15	+0.7
2,630,736	-		LU632_RS13745	0.15	-0.3
2,630,836	-		LU632_RS13745	0.17	-0.4
2,630,870	+		LU632_RS13745	0.17	-0.3
2,630,870	+		LU632_RS13745	0.17	+2.6
2,630,871	-		LU632_RS13745	0.17	-0.8
2,630,871	-		LU632_RS13745	0.17	+0.5
2,630,871	-		LU632_RS13745	0.17	-0.5
2,631,015	-		LU632_RS13745	0.19	+1.1
2,631,035	+		LU632_RS13745	0.19	-1.7
2,631,035	+		LU632_RS13745	0.19	-0.4
2,631,036	-		LU632_RS13745	0.19	-1.7
2,631,036	-		LU632_RS13745	0.19	+0.3
2,631,036	-		LU632_RS13745	0.19	+0.4
2,631,056	+		LU632_RS13745	0.20	-1.6
2,631,056	+		LU632_RS13745	0.20	-1.1
2,631,057	-		LU632_RS13745	0.20	-0.5
2,631,175	+		LU632_RS13745	0.21	+0.7
2,631,328	-		LU632_RS13745	0.24	+1.9
2,631,353	+		LU632_RS13745	0.24	+1.7
2,631,354	-		LU632_RS13745	0.24	-2.4
2,631,354	-		LU632_RS13745	0.24	-0.3
2,631,354	-		LU632_RS13745	0.24	-3.2
2,631,354	-		LU632_RS13745	0.24	+0.7
2,631,468	-		LU632_RS13745	0.26	-0.6
2,631,585	+		LU632_RS13745	0.27	+0.1
2,631,585	+		LU632_RS13745	0.27	-0.8
2,631,586	-		LU632_RS13745	0.27	-0.5
2,631,586	-		LU632_RS13745	0.27	-0.7
2,631,609	+		LU632_RS13745	0.28	-1.7
2,631,627	+		LU632_RS13745	0.28	+2.5
2,631,630	+		LU632_RS13745	0.28	-2.1
2,631,631	-		LU632_RS13745	0.28	-1.3
2,631,631	-		LU632_RS13745	0.28	-0.1
2,631,634	+		LU632_RS13745	0.28	-1.1
2,631,634	+		LU632_RS13745	0.28	-1.4
2,631,634	+		LU632_RS13745	0.28	-2.6
2,631,684	+		LU632_RS13745	0.29	+0.1
2,631,725	-		LU632_RS13745	0.29	+0.7
2,631,725	-		LU632_RS13745	0.29	+0.0
2,631,725	-		LU632_RS13745	0.29	-0.2
2,631,770	+		LU632_RS13745	0.30	-0.4
2,631,770	+		LU632_RS13745	0.30	+0.8
2,631,770	+		LU632_RS13745	0.30	-1.3
2,631,770	+		LU632_RS13745	0.30	-1.1
2,631,770	+		LU632_RS13745	0.30	+1.0
2,631,770	+		LU632_RS13745	0.30	-1.8
2,631,771	-		LU632_RS13745	0.30	+1.2
2,631,771	-		LU632_RS13745	0.30	+0.7
2,631,771	-		LU632_RS13745	0.30	-0.1
2,631,771	-		LU632_RS13745	0.30	+1.4
2,631,951	-		LU632_RS13745	0.32	+0.3
2,632,291	-		LU632_RS13745	0.37	+0.1
2,632,350	+		LU632_RS13745	0.38	+3.6
2,632,370	+		LU632_RS13745	0.38	-2.7
2,632,371	-		LU632_RS13745	0.38	+3.6
2,632,506	+		LU632_RS13745	0.40	-0.3
2,632,506	+		LU632_RS13745	0.40	-0.8
2,632,547	+		LU632_RS13745	0.41	-0.1
2,632,786	+		LU632_RS13745	0.44	-0.3
2,632,857	+		LU632_RS13745	0.45	-1.3
2,632,858	-		LU632_RS13745	0.45	-2.5
2,632,858	-		LU632_RS13745	0.45	-0.3
2,632,909	-		LU632_RS13745	0.46	-1.4
2,632,941	+		LU632_RS13745	0.46	+0.0
2,633,199	+		LU632_RS13745	0.50	+1.2
2,633,238	+		LU632_RS13745	0.51	+0.8
2,633,239	-		LU632_RS13745	0.51	+2.7
2,633,321	-		LU632_RS13745	0.52	+1.1
2,633,325	+		LU632_RS13745	0.52	-1.6
2,633,401	+		LU632_RS13745	0.53	-0.7
2,633,491	-		LU632_RS13745	0.54	-0.5
2,633,533	-		LU632_RS13745	0.55	+0.4
2,633,616	+		LU632_RS13745	0.56	+0.2
2,633,733	-		LU632_RS13745	0.58	+0.4
2,633,811	+		LU632_RS13745	0.59	+0.9
2,633,835	+		LU632_RS13745	0.59	-1.6
2,633,835	+		LU632_RS13745	0.59	+0.4
2,633,835	+		LU632_RS13745	0.59	+1.0
2,633,836	-		LU632_RS13745	0.59	+0.2
2,633,836	-		LU632_RS13745	0.59	+0.7
2,633,947	-		LU632_RS13745	0.61	+0.9
2,633,947	-		LU632_RS13745	0.61	-3.1
2,633,947	-		LU632_RS13745	0.61	+1.7
2,633,965	-		LU632_RS13745	0.61	-2.1
2,634,151	-		LU632_RS13745	0.64	-1.8
2,634,206	-		LU632_RS13745	0.64	-1.8
2,634,513	+		LU632_RS13745	0.69	-1.6
2,634,603	+		LU632_RS13745	0.70	+0.6
2,634,733	-		LU632_RS13745	0.72	-1.0
2,634,752	-		LU632_RS13745	0.72	-1.3
2,634,876	+		LU632_RS13745	0.74	-0.6
2,634,938	+		LU632_RS13745	0.75	+1.8
2,634,938	+		LU632_RS13745	0.75	+0.5
2,634,938	+		LU632_RS13745	0.75	+0.5
2,635,036	-		LU632_RS13745	0.76	-0.3
2,635,233	-		LU632_RS13745	0.79	-1.8
2,635,233	-		LU632_RS13745	0.79	+0.0
2,635,233	-		LU632_RS13745	0.79	+1.2
2,635,233	-		LU632_RS13745	0.79	-1.7
2,635,240	+		LU632_RS13745	0.79	-0.5
2,635,240	+		LU632_RS13745	0.79	+0.8
2,635,240	+		LU632_RS13745	0.79	-0.3
2,635,241	-		LU632_RS13745	0.79	-2.0
2,635,241	-		LU632_RS13745	0.79	-2.1
2,635,262	+		LU632_RS13745	0.79	+0.6
2,635,366	-		LU632_RS13745	0.81	-0.6
2,635,392	+		LU632_RS13745	0.81	+0.0
2,635,393	-		LU632_RS13745	0.81	+0.4
2,635,394	+		LU632_RS13745	0.81	-2.7
2,635,470	+		LU632_RS13745	0.82	+1.1
2,635,476	+		LU632_RS13745	0.82	+1.9
2,635,515	+		LU632_RS13745	0.83	-3.6
2,635,515	+		LU632_RS13745	0.83	-0.7
2,635,574	+		LU632_RS13745	0.84	-1.8
2,635,574	+		LU632_RS13745	0.84	-1.0
2,635,574	+		LU632_RS13745	0.84	-1.0
2,635,582	-		LU632_RS13745	0.84	-1.3
2,635,644	+		LU632_RS13745	0.85	-1.1
2,635,644	+		LU632_RS13745	0.85	+4.4
2,635,645	-		LU632_RS13745	0.85	+0.8
2,635,664	+		LU632_RS13745	0.85	+0.1
2,635,664	+		LU632_RS13745	0.85	+1.7
2,635,664	+		LU632_RS13745	0.85	+0.7
2,635,665	-		LU632_RS13745	0.85	-2.3
2,635,665	-		LU632_RS13745	0.85	-1.6
2,635,665	-		LU632_RS13745	0.85	+1.0
2,635,665	-		LU632_RS13745	0.85	-3.1
2,635,665	-		LU632_RS13745	0.85	+0.8
2,635,665	-		LU632_RS13745	0.85	+1.5
2,635,695	+		LU632_RS13745	0.85	+1.3
2,635,695	+		LU632_RS13745	0.85	+0.9
2,635,917	-		LU632_RS13745	0.89	-0.7
2,635,974	+		LU632_RS13745	0.89	+0.7
2,635,974	+		LU632_RS13745	0.89	-2.6
2,636,001	-		LU632_RS13745	0.90	-1.6
2,636,029	-				+4.7
2,636,226	+				+0.9
2,636,494	-				+0.7
2,636,542	-				+0.4
2,636,544	-				-0.6
2,636,727	-				+0.0
2,637,321	-				-0.2
2,637,699	+				-0.5
2,637,699	+				+0.8
2,637,699	+				-0.3
2,637,700	-				-0.7
2,637,701	+				+1.7
2,637,703	+				-0.6