Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13500

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
2,576,185	+				+0.4
2,576,249	+				+0.8
2,576,255	+				+0.7
2,576,461	+		LU632_RS13500	0.46	-0.3
2,576,496	-		LU632_RS13500	0.55	-1.5
2,576,677	+				+0.3
2,576,801	+				+2.0
2,577,172	-	flhA	LU632_RS13505	0.24	+1.5
2,577,172	-	flhA	LU632_RS13505	0.24	-2.6
2,577,317	-	flhA	LU632_RS13505	0.31	+1.7
2,577,362	+	flhA	LU632_RS13505	0.33	+0.7
2,577,593	+	flhA	LU632_RS13505	0.44	+2.2