Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12730

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
2,419,554	+		LU632_RS12725	0.41	-3.6
2,419,585	-		LU632_RS12725	0.45	-1.3
2,419,786	+		LU632_RS12725	0.72	-0.9
2,419,786	+		LU632_RS12725	0.72	-1.3
2,419,787	-		LU632_RS12725	0.72	+1.2
2,419,791	+		LU632_RS12725	0.72	+0.5
2,419,791	+		LU632_RS12725	0.72	-1.9
2,419,792	-		LU632_RS12725	0.72	-2.6
2,419,792	-		LU632_RS12725	0.72	-1.3
2,419,792	-		LU632_RS12725	0.72	-2.1
2,419,901	+		LU632_RS12725	0.87	-2.1
2,419,944	+				+1.5
2,420,008	+				+3.0
2,420,008	+				-3.0
2,420,009	-				-0.3
2,420,120	-				+0.2
2,420,185	+				-1.3
2,420,185	+				+0.2
2,420,186	-				+0.7
2,420,221	+				-3.0
2,420,221	+				-1.7
2,420,221	+				-2.6
2,420,222	-				-0.7
2,420,222	-				+1.1
2,420,223	+				-2.2
2,420,224	-				-1.9
2,420,224	-				+0.5
2,420,388	+				-1.6
2,420,392	-				-1.3
2,420,435	+				-1.6
2,420,436	-				-1.3
2,420,440	-				-1.1
2,420,440	-				+0.7
2,420,442	+				+1.0
2,420,443	-				+1.1
2,420,443	-				+0.4
2,420,443	-				-3.0
2,420,544	+				+0.5
2,420,646	-	rluB	LU632_RS12730	0.12	-0.9
2,420,691	+	rluB	LU632_RS12730	0.17	-0.1
2,420,691	+	rluB	LU632_RS12730	0.17	-1.0
2,420,691	+	rluB	LU632_RS12730	0.17	-0.9
2,420,692	-	rluB	LU632_RS12730	0.17	-1.3
2,420,695	+	rluB	LU632_RS12730	0.18	-0.3
2,420,696	-	rluB	LU632_RS12730	0.18	-3.3
2,420,755	+	rluB	LU632_RS12730	0.25	-1.9
2,420,854	+	rluB	LU632_RS12730	0.36	-2.6
2,420,856	+	rluB	LU632_RS12730	0.36	-0.6
2,420,857	-	rluB	LU632_RS12730	0.36	-2.4
2,421,070	+	rluB	LU632_RS12730	0.61	-3.0
2,421,071	-	rluB	LU632_RS12730	0.61	-2.6
2,421,074	-	rluB	LU632_RS12730	0.61	-0.7
2,421,166	+	rluB	LU632_RS12730	0.72	-0.3
2,421,167	-	rluB	LU632_RS12730	0.72	-1.3
2,421,190	-	rluB	LU632_RS12730	0.75	-1.6
2,421,193	-	rluB	LU632_RS12730	0.75	-2.1
2,421,232	+	rluB	LU632_RS12730	0.80	-3.2
2,421,232	+	rluB	LU632_RS12730	0.80	-1.4
2,421,308	-	rluB	LU632_RS12730	0.89	-2.3
2,421,469	+				-3.1
2,421,473	+				+0.7
2,421,474	-				+1.1
2,421,474	-				+1.3
2,421,474	-				+0.7
2,421,488	+				+0.7
2,421,531	+				-1.3
2,421,531	+				+1.1
2,421,532	-				-1.1
2,421,541	+				-0.6
2,421,551	+				-1.8
2,421,551	+				+1.4
2,421,551	+				-0.9
2,421,551	+				-1.5
2,421,551	+				-1.2
2,421,552	-				-1.9
2,421,552	-				+1.2
2,421,552	-				-0.8
2,421,552	-				+0.3
2,421,552	-				+0.7
2,421,555	+				-3.1
2,421,556	-				-0.4
2,421,556	-				+1.4
2,421,556	-				-1.3
2,421,556	-				+0.5
2,421,558	+				+0.5
2,421,559	-				-2.5
2,421,559	-				+0.1
2,421,559	-				-2.9
2,421,601	+				+1.5
2,421,604	-				-1.6
2,421,657	+				-1.9
2,421,657	+				-0.2
2,421,662	-				+2.0
2,421,685	-				+0.6
2,421,685	-				+0.6
2,421,781	+				-1.3
2,421,781	+				+1.5
2,421,781	+				-2.8
2,421,782	-				-2.9
2,421,782	-				-3.8
2,421,782	-				+1.2
2,421,782	-				+1.6
2,421,785	+				+1.1
2,421,785	+				-0.8
2,421,785	+				-1.9
2,421,786	-				-2.1
2,421,816	+				-0.9
2,421,817	-				-0.0
2,421,846	+				+1.2
2,421,846	+				-0.3
2,421,872	-				+0.3
2,421,885	-				-2.6
2,421,937	+				+0.7
2,421,939	+				+0.3
2,421,940	-				-0.4
2,421,940	-				-1.9
2,421,940	-				-0.6
2,421,944	+				+0.9
2,421,979	-				-1.5
2,422,069	+				+0.3
2,422,072	-				-0.3
2,422,108	-				-0.3
2,422,186	+				-1.6
2,422,199	+				+0.1
2,422,255	-				+1.5