Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12725

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
2,418,357	+	sohB	LU632_RS12720	0.35	+0.7
2,418,374	+	sohB	LU632_RS12720	0.36	+2.1
2,418,472	+	sohB	LU632_RS12720	0.46	-1.3
2,418,499	+	sohB	LU632_RS12720	0.48	+1.8
2,418,499	+	sohB	LU632_RS12720	0.48	-1.6
2,418,499	+	sohB	LU632_RS12720	0.48	+0.9
2,418,499	+	sohB	LU632_RS12720	0.48	+1.4
2,418,499	+	sohB	LU632_RS12720	0.48	-1.6
2,418,499	+	sohB	LU632_RS12720	0.48	-1.3
2,418,499	+	sohB	LU632_RS12720	0.48	-0.4
2,418,499	+	sohB	LU632_RS12720	0.48	+0.0
2,418,499	+	sohB	LU632_RS12720	0.48	-0.4
2,418,500	-	sohB	LU632_RS12720	0.48	+0.9
2,418,500	-	sohB	LU632_RS12720	0.48	-0.2
2,418,500	-	sohB	LU632_RS12720	0.48	-0.9
2,418,500	-	sohB	LU632_RS12720	0.48	+1.7
2,418,500	-	sohB	LU632_RS12720	0.48	-0.9
2,418,500	-	sohB	LU632_RS12720	0.48	+1.7
2,418,500	-	sohB	LU632_RS12720	0.48	+1.9
2,418,500	-	sohB	LU632_RS12720	0.48	-1.4
2,418,500	-	sohB	LU632_RS12720	0.48	-2.5
2,418,502	-	sohB	LU632_RS12720	0.48	+2.3
2,418,502	-	sohB	LU632_RS12720	0.48	-0.3
2,418,569	+	sohB	LU632_RS12720	0.55	-0.8
2,418,570	-	sohB	LU632_RS12720	0.55	+0.1
2,418,600	-	sohB	LU632_RS12720	0.58	-2.3
2,418,627	-	sohB	LU632_RS12720	0.60	+0.1
2,418,627	-	sohB	LU632_RS12720	0.60	+1.5
2,418,632	+	sohB	LU632_RS12720	0.61	+3.3
2,418,632	+	sohB	LU632_RS12720	0.61	-0.3
2,418,632	+	sohB	LU632_RS12720	0.61	-2.1
2,418,633	-	sohB	LU632_RS12720	0.61	-2.6
2,418,633	-	sohB	LU632_RS12720	0.61	-1.9
2,418,662	+	sohB	LU632_RS12720	0.64	+4.4
2,418,663	-	sohB	LU632_RS12720	0.64	-2.3
2,418,663	-	sohB	LU632_RS12720	0.64	+4.5
2,418,663	-	sohB	LU632_RS12720	0.64	+0.4
2,418,733	-	sohB	LU632_RS12720	0.70	+0.5
2,418,826	+	sohB	LU632_RS12720	0.79	-1.3
2,418,866	+	sohB	LU632_RS12720	0.83	-2.3
2,419,026	+				-2.6
2,419,027	-				-0.9
2,419,034	+				+2.1
2,419,055	-				+0.7
2,419,086	+				-2.5
2,419,086	+				+1.5
2,419,223	+				-0.5
2,419,224	-				-3.6
2,419,441	-		LU632_RS12725	0.26	-0.1
2,419,489	-		LU632_RS12725	0.33	-0.8
2,419,554	+		LU632_RS12725	0.41	-3.6
2,419,585	-		LU632_RS12725	0.45	-1.3
2,419,786	+		LU632_RS12725	0.72	-0.9
2,419,786	+		LU632_RS12725	0.72	-1.3
2,419,787	-		LU632_RS12725	0.72	+1.2
2,419,791	+		LU632_RS12725	0.72	+0.5
2,419,791	+		LU632_RS12725	0.72	-1.9
2,419,792	-		LU632_RS12725	0.72	-2.6
2,419,792	-		LU632_RS12725	0.72	-1.3
2,419,792	-		LU632_RS12725	0.72	-2.1
2,419,901	+		LU632_RS12725	0.87	-2.1
2,419,944	+				+1.5
2,420,008	+				+3.0
2,420,008	+				-3.0
2,420,009	-				-0.3
2,420,120	-				+0.2
2,420,185	+				-1.3
2,420,185	+				+0.2
2,420,186	-				+0.7
2,420,221	+				-3.0
2,420,221	+				-1.7
2,420,221	+				-2.6
2,420,222	-				-0.7
2,420,222	-				+1.1
2,420,223	+				-2.2
2,420,224	-				-1.9
2,420,224	-				+0.5
2,420,388	+				-1.6
2,420,392	-				-1.3
2,420,435	+				-1.6
2,420,436	-				-1.3
2,420,440	-				-1.1
2,420,440	-				+0.7
2,420,442	+				+1.0
2,420,443	-				+1.1
2,420,443	-				+0.4
2,420,443	-				-3.0
2,420,544	+				+0.5
2,420,646	-	rluB	LU632_RS12730	0.12	-0.9
2,420,691	+	rluB	LU632_RS12730	0.17	-0.1
2,420,691	+	rluB	LU632_RS12730	0.17	-1.0
2,420,691	+	rluB	LU632_RS12730	0.17	-0.9
2,420,692	-	rluB	LU632_RS12730	0.17	-1.3
2,420,695	+	rluB	LU632_RS12730	0.18	-0.3
2,420,696	-	rluB	LU632_RS12730	0.18	-3.3
2,420,755	+	rluB	LU632_RS12730	0.25	-1.9
2,420,854	+	rluB	LU632_RS12730	0.36	-2.6
2,420,856	+	rluB	LU632_RS12730	0.36	-0.6
2,420,857	-	rluB	LU632_RS12730	0.36	-2.4