Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11705

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
2,224,911	+	rhaR	LU632_RS11695	0.46	-1.1
2,224,911	+	rhaR	LU632_RS11695	0.46	+0.4
2,224,911	+	rhaR	LU632_RS11695	0.46	-1.3
2,225,040	+	rhaR	LU632_RS11695	0.61	-2.1
2,225,040	+	rhaR	LU632_RS11695	0.61	-0.2
2,225,041	-	rhaR	LU632_RS11695	0.62	-0.9
2,225,168	-	rhaR	LU632_RS11695	0.76	+5.6
2,225,228	+	rhaR	LU632_RS11695	0.83	-0.9
2,225,373	+				-1.9
2,225,446	+		LU632_RS11700	0.22	+0.7
2,225,446	+		LU632_RS11700	0.22	-1.5
2,225,446	+		LU632_RS11700	0.22	+0.9
2,225,447	-		LU632_RS11700	0.22	-1.3
2,225,512	-		LU632_RS11700	0.48	+0.7
2,225,512	-		LU632_RS11700	0.48	-0.3
2,225,513	-		LU632_RS11700	0.49	-0.7
2,225,624	-				-0.2
2,225,640	+				-3.5
2,225,683	+				-1.3
2,225,702	+				+1.0
2,225,702	+				-1.3
2,225,703	-				+0.8
2,226,028	+				-2.3
2,226,029	-				-1.3
2,226,201	+		LU632_RS11705	0.19	-1.3
2,226,346	-		LU632_RS11705	0.28	+0.7
2,226,346	-		LU632_RS11705	0.28	+1.4
2,226,622	-		LU632_RS11705	0.44	-1.3
2,226,863	-		LU632_RS11705	0.59	+1.2
2,227,010	-		LU632_RS11705	0.67	-0.3
2,227,208	+		LU632_RS11705	0.79	-0.4
2,227,208	+		LU632_RS11705	0.79	+0.4
2,227,209	-		LU632_RS11705	0.79	+0.9
2,227,209	-		LU632_RS11705	0.79	+1.1
2,227,232	-		LU632_RS11705	0.81	-2.9
2,227,232	-		LU632_RS11705	0.81	+0.6
2,227,232	-		LU632_RS11705	0.81	+2.1
2,227,370	+		LU632_RS11705	0.89	+1.7
2,227,412	-				-0.8
2,227,423	-				-0.3
2,227,466	+				-0.2
2,227,466	+				+1.8
2,227,466	+				-0.3
2,227,466	+				-0.9
2,227,466	+				+0.5
2,227,466	+				-1.9
2,227,547	-				+0.7
2,227,547	-				-3.2
2,227,549	-				+0.7
2,227,554	+				-0.1
2,227,610	+				-0.2
2,227,611	-				+0.2
2,227,612	+				-1.1
2,227,612	+				-0.3
2,227,613	-				-0.7
2,227,613	-				-3.0
2,227,613	-				+0.5
2,227,613	-				-1.9
2,227,843	+				+0.1
2,227,843	+				-0.0
2,227,854	+				-2.8
2,227,855	-				+0.9
2,227,886	+				+1.4
2,227,996	+				-2.9
2,228,065	+		LU632_RS11710	0.17	+0.2
2,228,120	-		LU632_RS11710	0.25	+1.7
2,228,120	-		LU632_RS11710	0.25	+0.3
2,228,210	+		LU632_RS11710	0.38	-1.3
2,228,276	-		LU632_RS11710	0.48	-0.9
2,228,293	+		LU632_RS11710	0.50	+0.2