Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07950

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
1,485,985	+		LU632_RS07945	0.50	+0.4
1,486,081	-		LU632_RS07945	0.55	-1.5
1,486,087	+		LU632_RS07945	0.55	+0.8
1,486,135	-		LU632_RS07945	0.58	-2.1
1,486,177	+		LU632_RS07945	0.60	+0.6
1,486,177	+		LU632_RS07945	0.60	+0.4
1,486,178	-		LU632_RS07945	0.60	+0.4
1,486,245	+		LU632_RS07945	0.64	-2.5
1,486,267	+		LU632_RS07945	0.65	+2.2
1,486,402	-		LU632_RS07945	0.73	+1.2
1,486,435	+		LU632_RS07945	0.74	-1.5
1,486,437	+		LU632_RS07945	0.75	-2.1
1,486,437	+		LU632_RS07945	0.75	-1.3
1,486,437	+		LU632_RS07945	0.75	+0.3
1,486,437	+		LU632_RS07945	0.75	+0.4
1,486,438	-		LU632_RS07945	0.75	-2.6
1,486,438	-		LU632_RS07945	0.75	+1.2
1,486,438	-		LU632_RS07945	0.75	-0.2
1,486,438	-		LU632_RS07945	0.75	-2.1
1,486,438	-		LU632_RS07945	0.75	+0.9
1,486,543	+		LU632_RS07945	0.80	-1.6
1,486,544	+		LU632_RS07945	0.80	+3.7
1,486,544	-		LU632_RS07945	0.80	+0.2
1,486,544	-		LU632_RS07945	0.80	-0.4
1,486,544	-		LU632_RS07945	0.80	+1.4
1,486,544	-		LU632_RS07945	0.80	-0.6
1,486,544	-		LU632_RS07945	0.80	-0.7
1,486,544	-		LU632_RS07945	0.80	+0.1
1,486,726	+				+0.4
1,486,780	+				-3.6
1,486,783	+				+0.7
1,486,783	+				-0.1
1,486,784	-				-0.2
1,486,784	-				+3.0
1,486,788	+				+0.6
1,486,789	-				+1.6
1,486,909	+				+0.5
1,486,911	+				-1.5
1,486,911	+				-0.7
1,486,912	-				+0.3
1,486,926	+				-1.3
1,487,254	+	yfbR	LU632_RS07950	0.58	-2.5
1,487,254	+	yfbR	LU632_RS07950	0.58	-2.4
1,487,287	-	yfbR	LU632_RS07950	0.63	-2.1
1,487,305	+	yfbR	LU632_RS07950	0.66	-3.1
1,487,305	+	yfbR	LU632_RS07950	0.66	-2.8
1,487,305	+	yfbR	LU632_RS07950	0.66	-2.8
1,487,315	+	yfbR	LU632_RS07950	0.68	-0.1
1,487,315	+	yfbR	LU632_RS07950	0.68	-0.5
1,487,401	-	yfbR	LU632_RS07950	0.83	-1.5
1,487,460	-				-0.0
1,487,505	-				+1.4
1,487,537	+				-2.2
1,487,537	+				-3.1
1,487,602	-				+0.1
1,487,733	+				-0.1
1,487,734	-				-1.1
1,487,734	-				-2.7
1,487,809	-		LU632_RS07955	0.15	-0.4
1,487,841	+		LU632_RS07955	0.18	-0.3
1,487,841	+		LU632_RS07955	0.18	-0.5
1,487,841	+		LU632_RS07955	0.18	-1.7
1,487,841	+		LU632_RS07955	0.18	-0.1
1,487,841	+		LU632_RS07955	0.18	-1.1
1,487,842	-		LU632_RS07955	0.18	-1.0
1,487,842	-		LU632_RS07955	0.18	+0.3
1,487,842	-		LU632_RS07955	0.18	-1.7
1,487,842	-		LU632_RS07955	0.18	-3.2
1,487,842	-		LU632_RS07955	0.18	-1.5
1,487,842	-		LU632_RS07955	0.18	+1.3
1,487,842	-		LU632_RS07955	0.18	-1.5
1,487,842	-		LU632_RS07955	0.18	-4.0
1,487,843	+		LU632_RS07955	0.18	-1.8
1,487,843	+		LU632_RS07955	0.18	-2.5
1,487,843	+		LU632_RS07955	0.18	-0.7
1,487,843	+		LU632_RS07955	0.18	-1.5
1,487,921	+		LU632_RS07955	0.24	-1.5
1,487,922	-		LU632_RS07955	0.24	-0.6
1,488,058	-		LU632_RS07955	0.36	-0.7
1,488,241	-		LU632_RS07955	0.51	-3.1
1,488,262	+		LU632_RS07955	0.52	-2.3
1,488,262	+		LU632_RS07955	0.52	-0.1
1,488,288	-		LU632_RS07955	0.54	-0.7
1,488,288	-		LU632_RS07955	0.54	-0.3
1,488,288	-		LU632_RS07955	0.54	-1.5
1,488,288	-		LU632_RS07955	0.54	-1.5
1,488,361	-		LU632_RS07955	0.60	-1.5
1,488,404	+		LU632_RS07955	0.64	-0.9
1,488,404	+		LU632_RS07955	0.64	+3.0
1,488,405	-		LU632_RS07955	0.64	+0.3
1,488,405	-		LU632_RS07955	0.64	-1.4
1,488,405	-		LU632_RS07955	0.64	-0.7
1,488,409	+		LU632_RS07955	0.64	-3.6
1,488,410	-		LU632_RS07955	0.65	-1.0