Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07280

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
1,374,115	+		LU632_RS07270	0.38	+0.8
1,374,173	-		LU632_RS07270	0.53	+0.5
1,374,173	-		LU632_RS07270	0.53	-0.7
1,374,250	+		LU632_RS07270	0.74	-1.7
1,374,251	-		LU632_RS07270	0.74	+0.9
1,374,251	-		LU632_RS07270	0.74	-1.4
1,374,251	-		LU632_RS07270	0.74	-1.0
1,374,252	+		LU632_RS07270	0.74	+0.6
1,374,252	+		LU632_RS07270	0.74	+1.5
1,374,252	+		LU632_RS07270	0.74	-1.4
1,374,252	+		LU632_RS07270	0.74	+0.9
1,374,253	-		LU632_RS07270	0.74	-0.3
1,374,253	-		LU632_RS07270	0.74	-0.0
1,374,253	-		LU632_RS07270	0.74	-1.5
1,374,273	+		LU632_RS07270	0.80	-1.9
1,374,351	-				+0.9
1,374,351	-				-0.6
1,374,371	+				+0.2
1,374,380	+				-3.3
1,374,380	+				-0.0
1,374,381	-				-2.5
1,374,394	-				-0.1
1,374,402	-				+0.8
1,374,444	+		LU632_RS07275	0.18	+1.0
1,374,516	+		LU632_RS07275	0.41	+0.3
1,374,535	+		LU632_RS07275	0.47	-0.2
1,374,536	-		LU632_RS07275	0.48	-2.0
1,374,536	-		LU632_RS07275	0.48	-2.0
1,374,620	+		LU632_RS07275	0.75	-0.1
1,374,623	+		LU632_RS07275	0.76	-0.4
1,374,697	+				+2.0
1,374,697	+				-1.7
1,374,697	+				-0.8
1,374,697	+				-2.1
1,374,697	+				-2.7
1,374,698	-				+0.7
1,374,718	+				-3.1
1,374,718	+				-2.1
1,374,789	-		LU632_RS07280	0.23	-1.7
1,374,794	+		LU632_RS07280	0.24	-1.1
1,374,823	+		LU632_RS07280	0.30	+1.2
1,374,823	+		LU632_RS07280	0.30	+1.7
1,374,824	-		LU632_RS07280	0.31	+0.7
1,374,905	-		LU632_RS07280	0.49	+0.4
1,374,909	+		LU632_RS07280	0.50	-0.7
1,374,910	-		LU632_RS07280	0.50	+0.4
1,374,910	-		LU632_RS07280	0.50	-0.4
1,374,945	+		LU632_RS07280	0.58	-0.5
1,374,946	-		LU632_RS07280	0.58	+0.5
1,374,959	+		LU632_RS07280	0.61	-0.2
1,374,975	+		LU632_RS07280	0.65	-1.5
1,374,975	+		LU632_RS07280	0.65	-2.1
1,374,975	+		LU632_RS07280	0.65	-2.1
1,374,976	-		LU632_RS07280	0.65	+0.9
1,374,979	+		LU632_RS07280	0.66	-4.1
1,374,979	+		LU632_RS07280	0.66	+1.0
1,374,980	-		LU632_RS07280	0.66	-1.5
1,374,980	-		LU632_RS07280	0.66	+1.7
1,374,980	-		LU632_RS07280	0.66	+0.1
1,375,054	+		LU632_RS07280	0.83	+1.9
1,375,068	-		LU632_RS07280	0.86	+0.8
1,375,068	-		LU632_RS07280	0.86	-2.5
1,375,135	+				+0.9
1,375,179	-				-3.2
1,375,210	-				+0.4
1,375,214	-				+0.8
1,375,357	+				-1.5
1,375,357	+				-0.2
1,375,357	+				-0.6
1,375,358	-				-1.5
1,375,358	-				+0.6
1,375,483	+		LU632_RS07285	0.61	-0.2
1,375,484	-		LU632_RS07285	0.61	+3.2
1,375,560	+				+0.9
1,375,561	-				-0.1
1,375,575	+				+0.0
1,375,580	-				-0.1
1,375,580	-				-0.1
1,375,582	+				+0.3
1,375,621	-				-2.5
1,375,650	-				-0.1
1,375,736	-				-1.2
1,375,771	+				+1.0
1,375,772	-				+0.4
1,375,776	-				-2.5
1,375,797	+				-3.8
1,375,801	+				-0.4
1,375,802	-				+1.2