Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06240

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
1,194,198	-	tcdA	LU632_RS06230	0.39	-2.0
1,194,234	-	tcdA	LU632_RS06230	0.43	-4.4
1,194,234	-	tcdA	LU632_RS06230	0.43	+0.8
1,194,254	-	tcdA	LU632_RS06230	0.46	-1.2
1,194,319	-	tcdA	LU632_RS06230	0.54	-2.2
1,194,319	-	tcdA	LU632_RS06230	0.54	+3.3
1,194,333	+	tcdA	LU632_RS06230	0.56	+1.6
1,194,420	+	tcdA	LU632_RS06230	0.67	-2.0
1,194,425	+	tcdA	LU632_RS06230	0.67	+0.8
1,194,485	+	tcdA	LU632_RS06230	0.75	+0.2
1,194,485	+	tcdA	LU632_RS06230	0.75	+1.3
1,194,485	+	tcdA	LU632_RS06230	0.75	-0.7
1,194,517	+	tcdA	LU632_RS06230	0.79	-0.2
1,194,518	-	tcdA	LU632_RS06230	0.79	-3.6
1,194,654	-				-1.5
1,194,791	-	csdE	LU632_RS06235	0.23	+0.3
1,194,796	+	csdE	LU632_RS06235	0.24	-3.0
1,194,872	-	csdE	LU632_RS06235	0.41	+1.8
1,194,896	+	csdE	LU632_RS06235	0.47	+0.1
1,194,897	-	csdE	LU632_RS06235	0.47	+2.5
1,194,897	-	csdE	LU632_RS06235	0.47	+0.5
1,195,019	-	csdE	LU632_RS06235	0.75	+1.0
1,195,199	+				-1.5
1,195,202	+				-0.7
1,195,203	-				-1.0
1,195,203	-				-0.1
1,195,203	-				-0.7
1,195,205	-				-0.7
1,195,230	-				+0.8
1,195,253	+				+2.0
1,195,254	-				+2.1
1,195,317	+	csdA	LU632_RS06240	0.15	+2.0
1,195,318	-	csdA	LU632_RS06240	0.15	-1.7
1,195,318	-	csdA	LU632_RS06240	0.15	-1.7
1,195,503	+	csdA	LU632_RS06240	0.31	+0.3
1,195,503	+	csdA	LU632_RS06240	0.31	-1.0
1,195,585	-	csdA	LU632_RS06240	0.37	-0.7
1,195,585	-	csdA	LU632_RS06240	0.37	+3.5
1,195,694	+	csdA	LU632_RS06240	0.46	-2.1
1,195,734	+	csdA	LU632_RS06240	0.50	+2.1
1,195,734	+	csdA	LU632_RS06240	0.50	+0.6
1,195,735	-	csdA	LU632_RS06240	0.50	+1.2
1,195,735	-	csdA	LU632_RS06240	0.50	+1.1
1,195,929	-	csdA	LU632_RS06240	0.66	-2.1
1,196,177	-	csdA	LU632_RS06240	0.86	-2.6
1,196,226	-				+1.7
1,196,226	-				-0.2
1,196,275	+				-0.2
1,196,275	+				-1.2
1,196,276	-				-0.2
1,196,276	-				+0.2
1,196,276	-				-0.2
1,196,327	+				-0.3
1,196,327	+				+1.3
1,196,339	+				+0.2
1,196,340	-				-2.7
1,196,395	+				-2.3
1,196,442	-				+2.2
1,196,442	-				-0.7
1,196,470	+				-2.7
1,196,483	-				-1.8
1,196,528	+				+0.4
1,196,571	-		LU632_RS06245	0.11	-0.2
1,196,571	-		LU632_RS06245	0.11	+0.1
1,196,589	-		LU632_RS06245	0.20	+0.4
1,196,592	+		LU632_RS06245	0.21	-0.6
1,196,592	+		LU632_RS06245	0.21	+0.7
1,196,592	+		LU632_RS06245	0.21	-2.7
1,196,592	+		LU632_RS06245	0.21	-1.5
1,196,637	-		LU632_RS06245	0.44	-2.2
1,196,658	-		LU632_RS06245	0.55	-1.2
1,196,746	-				-2.1