Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05970

Experiment: Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 4 Main Stem (TE2-S-C4-MS)
1,130,091	-				+1.3
1,130,218	-				-1.9
1,130,218	-				+0.9
1,130,219	+				-1.1
1,130,220	-				-2.1
1,130,220	-				-4.1
1,130,223	+				-1.4
1,130,224	-				-2.6
1,130,274	+	sdhE	LU632_RS05960	0.23	-5.4
1,130,280	+	sdhE	LU632_RS05960	0.25	-2.7
1,130,299	+	sdhE	LU632_RS05960	0.33	+0.9
1,130,342	+	sdhE	LU632_RS05960	0.49	-2.7
1,130,376	+	sdhE	LU632_RS05960	0.61	-1.4
1,130,424	+	sdhE	LU632_RS05960	0.79	-1.7
1,130,570	+		LU632_RS05965	0.28	+0.8
1,130,570	+		LU632_RS05965	0.28	-0.0
1,130,571	-		LU632_RS05965	0.28	-2.6
1,130,571	-		LU632_RS05965	0.28	-2.1
1,130,573	-		LU632_RS05965	0.28	-2.0
1,130,607	+		LU632_RS05965	0.37	+0.1
1,130,608	-		LU632_RS05965	0.37	+0.9
1,130,745	+		LU632_RS05965	0.71	+0.3
1,130,803	+		LU632_RS05965	0.86	-0.7
1,130,803	+		LU632_RS05965	0.86	-0.1
1,130,803	+		LU632_RS05965	0.86	-2.1
1,130,803	+		LU632_RS05965	0.86	-0.7
1,130,803	+		LU632_RS05965	0.86	-0.7
1,130,856	+				-0.1
1,130,856	+				+1.5
1,130,857	-				-1.4
1,130,858	+				-1.4
1,130,863	+				+0.1
1,130,863	+				-0.1
1,130,864	-				-0.8
1,130,897	+				-1.0
1,130,945	+				-1.9
1,130,945	+				-2.7
1,130,952	+				+0.1
1,130,977	-				+0.9
1,131,141	+	fldB	LU632_RS05970	0.33	-2.4
1,131,173	+	fldB	LU632_RS05970	0.39	+1.1
1,131,173	+	fldB	LU632_RS05970	0.39	-0.1
1,131,173	+	fldB	LU632_RS05970	0.39	+2.9
1,131,173	+	fldB	LU632_RS05970	0.39	+0.3
1,131,174	-	fldB	LU632_RS05970	0.39	-0.1
1,131,174	-	fldB	LU632_RS05970	0.39	-0.7
1,131,175	+	fldB	LU632_RS05970	0.39	+2.2
1,131,175	+	fldB	LU632_RS05970	0.39	+2.9
1,131,175	+	fldB	LU632_RS05970	0.39	+0.3
1,131,175	+	fldB	LU632_RS05970	0.39	-0.3
1,131,175	+	fldB	LU632_RS05970	0.39	+0.1
1,131,176	-	fldB	LU632_RS05970	0.40	-1.4
1,131,176	-	fldB	LU632_RS05970	0.40	+0.9
1,131,327	-	fldB	LU632_RS05970	0.69	+1.8
1,131,352	+	fldB	LU632_RS05970	0.74	-3.8
1,131,390	-	fldB	LU632_RS05970	0.81	-1.1
1,131,452	-				-1.4
1,131,452	-				+0.6
1,131,452	-				+1.2
1,131,452	-				-2.5
1,131,452	-				+2.8
1,131,528	+				-2.3
1,132,010	+	xerD	LU632_RS05975	0.47	+0.9
1,132,010	+	xerD	LU632_RS05975	0.47	-2.7
1,132,010	+	xerD	LU632_RS05975	0.47	-1.4
1,132,159	+	xerD	LU632_RS05975	0.64	-1.1
1,132,425	-				-1.1
1,132,452	+				+0.9
1,132,452	+				+0.9